Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10m20
(878 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY656663-1|AAT68000.1| 148|Apis mellifera pteropsin protein. 27 0.30
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 25 0.70
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 25 0.70
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 25 0.70
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 25 0.70
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 23 4.9
AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly pro... 23 4.9
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 22 6.5
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 22 8.6
>AY656663-1|AAT68000.1| 148|Apis mellifera pteropsin protein.
Length = 148
Score = 26.6 bits (56), Expect = 0.30
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 828 VSXPKYLXWG-FGXFQ-NYCCSXCWVVNDPIESS 733
+S P WG +G N CS W V+DP+ +S
Sbjct: 29 LSLPPLFGWGSYGPEAGNVSCSVSWEVHDPVTNS 62
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.4 bits (53), Expect = 0.70
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 532 NYIIYNNSRCCNNSFGTHRYLIINY 606
NY YNN+ NN++ +Y INY
Sbjct: 93 NYNNYNNNNYNNNNYKKLQYYNINY 117
Score = 23.4 bits (48), Expect = 2.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 637 DYIIYNNSRCCNNSFGXHRYLIINY 711
+Y YNN+ NN++ +Y INY
Sbjct: 93 NYNNYNNNNYNNNNYKKLQYYNINY 117
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.4 bits (53), Expect = 0.70
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 532 NYIIYNNSRCCNNSFGTHRYLIINY 606
NY YNN+ NN++ +Y INY
Sbjct: 93 NYNNYNNNNYNNNNYKKLQYYNINY 117
Score = 23.4 bits (48), Expect = 2.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 637 DYIIYNNSRCCNNSFGXHRYLIINY 711
+Y YNN+ NN++ +Y INY
Sbjct: 93 NYNNYNNNNYNNNNYKKLQYYNINY 117
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.4 bits (53), Expect = 0.70
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 532 NYIIYNNSRCCNNSFGTHRYLIINY 606
NY YNN+ NN++ +Y INY
Sbjct: 93 NYNNYNNNNYNNNNYKKLQYYNINY 117
Score = 23.4 bits (48), Expect = 2.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 637 DYIIYNNSRCCNNSFGXHRYLIINY 711
+Y YNN+ NN++ +Y INY
Sbjct: 93 NYNNYNNNNYNNNNYKKLQYYNINY 117
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.4 bits (53), Expect = 0.70
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 532 NYIIYNNSRCCNNSFGTHRYLIINY 606
NY YNN+ NN++ +Y INY
Sbjct: 93 NYNNYNNNNYNNNNYKKLQYYNINY 117
Score = 23.4 bits (48), Expect = 2.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 637 DYIIYNNSRCCNNSFGXHRYLIINY 711
+Y YNN+ NN++ +Y INY
Sbjct: 93 NYNNYNNNNYNNNNYKKLQYYNINY 117
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 22.6 bits (46), Expect = 4.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 532 NYIIYNNSRCCNNSFGTHRYLIINY 606
N I+NN+ NN++ + Y NY
Sbjct: 87 NKTIHNNNNYNNNNYNNYNYNNNNY 111
>AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly
protein 8 protein.
Length = 416
Score = 22.6 bits (46), Expect = 4.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 67 FLLRFDFNQSCSGFCSDSFYGFRFNNHNF 153
F L +++ + S YGF FN+ NF
Sbjct: 369 FPLEYEYVLAVSNRIQKVIYGFDFNDVNF 397
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 22.2 bits (45), Expect = 6.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -3
Query: 846 NGVSTGVSXPKYLXWGFGXFQNYCCSXCWVVNDPIESSTGAS 721
N + G+S PKY F F + C+ +D + +++G +
Sbjct: 327 NPIVYGISHPKYRAALFAKFPSLACA-AEPSSDAVSTTSGTT 367
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.6
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +1
Query: 532 NYIIYNNSRCCNNSFGTHR--YLIINY 606
N I+NN+ NN++ ++ Y INY
Sbjct: 87 NKTIHNNNNYNNNNYNNYKKLYYNINY 113
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,536
Number of Sequences: 438
Number of extensions: 4007
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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