Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10m19
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...   265   4e-72
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...    85   1e-17
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    29   0.90 
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    27   2.1  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    26   6.3  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   8.4  

>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score =  265 bits (650), Expect = 4e-72
 Identities = 123/205 (60%), Positives = 162/205 (79%), Gaps = 1/205 (0%)
 Frame = -1

Query: 730 LLGPPGSGKGTQAXRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMV 551
           L+GPPG+GKGTQA  +++KY + HL+TGDMLR++V+  ++LG+  KK+MD+G LVSD++V
Sbjct: 8   LVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLVSDDIV 67

Query: 550 VDMI-DKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLLVRR 374
             MI D+ L+ PECKNGF+LDGFPRTV QAEKL  LL + K  L+ V+E  ++D LLVRR
Sbjct: 68  TGMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDELLVRR 127

Query: 373 ITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVPLV 194
           ITGRL+HP SGRSYH EF+PPK PM DDVTGE LI+RSDDN +AL+KRL TYH QT P+V
Sbjct: 128 ITGRLVHPGSGRSYHLEFNPPKVPMKDDVTGEPLIQRSDDNADALRKRLVTYHEQTTPVV 187

Query: 193 DYYMRKGLHWRVDASKAADDVFNKI 119
           ++Y +KG    VDA++  + V+ +I
Sbjct: 188 EFYKKKGKWAAVDAAQKPEQVWEQI 212


>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 4/205 (1%)
 Frame = -1

Query: 730 LLGPPGSGKGTQAXRLKEKY-CVCHLSTGDMLRAEVS-SGSDLGRRLKKVMDEGKLVSDE 557
           +LG PG+GKGTQ  RL EK+    H+S GD LR E +  GS  G  +K+ + +GK+V  E
Sbjct: 7   VLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIVPME 66

Query: 556 MVVDMIDKNLDQPECK--NGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLL 383
           + + +++  + +   K  + FL+DGFPR + Q E  +  +   K AL     F      +
Sbjct: 67  ITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFAL----YFRCGQETM 122

Query: 382 VRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTV 203
           ++R+  R     SGRS                         DDN+E++KKR  TY   ++
Sbjct: 123 LKRLIHR--GKTSGRS-------------------------DDNIESIKKRFVTYTKASM 155

Query: 202 PLVDYYMRKGLHWRVDASKAADDVF 128
           P+V+Y   +     +DA +  D VF
Sbjct: 156 PVVEYLKSQNRLITIDAEQDPDAVF 180


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 664 CHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQP 518
           C  S  +MLR       D G   +K++ E +  S      ++D+++ QP
Sbjct: 193 CRKSLSEMLRELKDIEDDYGSNEEKILQEFESFSSSSSESLVDRDISQP 241


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 538 DKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVI-EFGIEDSLLVRRIT 368
           ++N +QP    G    GF R++PQ ++L  ++ +    L+ ++ + G  D  L + IT
Sbjct: 232 NENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAIT 289


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 658 LSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMV-VDMIDKNLDQPECKNGFLLDGFP 482
           L TG  ++  V   +  G    K+ +  K +  ++  +++++ N+D PE  N      F 
Sbjct: 211 LMTGKKIKGTVLIDAANGVGAAKIKELAKYIDPKLFPIEIVNDNIDNPELLNNSCGADFV 270

Query: 481 RT 476
           RT
Sbjct: 271 RT 272


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
 Frame = -1

Query: 730 LLGPPGSGKGTQAXRLKEKYCVCHLS--TGDML----RAEVSSGSDLGRRLKKVMDEGKL 569
           ++GPPG+GK T    L  +Y    +S  TG +     +    +  +    L  ++D  K+
Sbjct: 79  VMGPPGTGKSTLIKSLVRRYSKYTISQITGPITVVAGKKRRITFLECPNDLSSMIDVAKI 138

Query: 568 VSDEMVVDMIDKN----LDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDA 416
              ++V+ +ID N    ++  E  N     G PR +     L DL  K  T  +A
Sbjct: 139 A--DLVLLLIDANFGFEMETMEFLNILAPHGMPRIMGVLTHL-DLFKKTSTLREA 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,470
Number of Sequences: 5004
Number of extensions: 57668
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)