Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10m19
(730 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 2.9
DQ468657-1|ABE02558.1| 322|Apis mellifera 1,4,5-trisphosphate r... 23 3.9
AB006152-1|BAA24504.1| 178|Apis mellifera inositol 1,4,5-tripho... 23 3.9
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 22 6.8
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 22 6.8
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 22 6.8
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 6.8
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 21 9.0
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 21 9.0
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 21 9.0
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 23.0 bits (47), Expect = 2.9
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -3
Query: 242 SEETLSYISCSNGSFSRLL 186
+EET+ Y+ +G+FSRL+
Sbjct: 172 AEETVDYMLEKSGNFSRLV 190
>DQ468657-1|ABE02558.1| 322|Apis mellifera 1,4,5-trisphosphate
receptor protein.
Length = 322
Score = 22.6 bits (46), Expect = 3.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 386 QTVLDSELDYGVQCSLAL 439
Q +LD LDY + C L++
Sbjct: 56 QFILDVRLDYRISCLLSI 73
>AB006152-1|BAA24504.1| 178|Apis mellifera inositol
1,4,5-triphosphate recepter protein.
Length = 178
Score = 22.6 bits (46), Expect = 3.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 386 QTVLDSELDYGVQCSLAL 439
Q +LD LDY + C L++
Sbjct: 24 QFILDVRLDYRISCLLSI 41
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.8 bits (44), Expect = 6.8
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 329 VIATTTR-WVNQSARNSPYEQTVLD--SELDYGVQCSLALRQ*IVQLLSLG 472
V+AT W+ A +SP D EL+ G C L RQ V SLG
Sbjct: 153 VLATIAGVWILSGAISSPPLAGWNDWPEELEPGTPCQLTRRQGYVIYSSLG 203
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.8 bits (44), Expect = 6.8
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 329 VIATTTR-WVNQSARNSPYEQTVLD--SELDYGVQCSLALRQ*IVQLLSLG 472
V+AT W+ A +SP D EL+ G C L RQ V SLG
Sbjct: 153 VLATIAGVWILSGAISSPPLAGWNDWPEELEPGTPCQLTRRQGYVIYSSLG 203
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 21.8 bits (44), Expect = 6.8
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 329 VIATTTR-WVNQSARNSPYEQTVLD--SELDYGVQCSLALRQ*IVQLLSLG 472
V+AT W+ A +SP D EL+ G C L RQ V SLG
Sbjct: 153 VLATIAGVWILSGAISSPPLAGWNDWPEELEPGTPCQLTRRQGYVIYSSLG 203
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 6.8
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Frame = -1
Query: 562 DEMVVDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLL 383
D V+++D D E + D + LDD +++ AVI + D L+
Sbjct: 119 DVTTVELVDAT-DPGEHNGDTVTDVEAGLASRTNPLDDSISQANEGFCAVIS--MHDGLV 175
Query: 382 ------VRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLAT 221
+ G L GRS+ + HP K D ++ ++ + + R A+
Sbjct: 176 LYTTPSICTALGYLKDAWIGRSFIDYVHPKDKATLADQIKNGIVSPQEERPKGINGRRAS 235
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 609 WDDALRRSWMRAN 571
WD AL W+R N
Sbjct: 224 WDQALALRWLRDN 236
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/29 (24%), Positives = 17/29 (58%)
Frame = +3
Query: 222 VAKRFFRASTLSSDLFIKASPVTSSVIGF 308
+AKR + T+ + + + + + S ++GF
Sbjct: 472 IAKRLWLGETIEAKTYPEVTMLFSDIVGF 500
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 609 WDDALRRSWMRAN 571
WD AL W+R N
Sbjct: 224 WDQALALRWLRDN 236
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,295
Number of Sequences: 438
Number of extensions: 3720
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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