Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10m17
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    27   1.9  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   3.4  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    27   3.4  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    26   4.4  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   5.9  

>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 354 KNTICILEFLEIWNLILIYYIKHSILRKLNKSEHYY 247
           KN+   L   +IW+LI+ Y     ILR ++ S  +Y
Sbjct: 40  KNSNLFLLNRDIWSLIINYLDAFDILRLMHSSRQFY 75


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 260 DLFSLRSMLCFM**IRIKFQISRNSKIHIVFFGEN*LLQNIHNQILNTHKF-SNSKLLDT 436
           D+ SL+ +L F    RI  +  +NS  ++    +N   ++IH   L +H F +N+K  DT
Sbjct: 774 DIASLQCVLQFGSSERIHLEDIQNSHRYLCSLKKNNSQKDIHRNPLLSHVFDTNTKSFDT 833

Query: 437 I 439
           +
Sbjct: 834 L 834


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 22/81 (27%), Positives = 37/81 (45%)
 Frame = +3

Query: 99  IMTHVRKKTRLHKIFTSYFSICKNKTTSKQNNHNIVYVQSEISSHHKFIYNNVQIYLACV 278
           ++TH R K    KI+ +     K KT+ K+  + +VY   E S   K  + N+ + + C 
Sbjct: 136 VVTH-RDKITDAKIYYAAKVYRKTKTSHKKRLNTMVYFLREWSIQPKLDHPNI-LKVIC- 192

Query: 279 VCYVLCSKLESNSKFLEIPRY 341
            C  L S    ++ F  +  Y
Sbjct: 193 PCVTLTSVFNKSAGFCLVQEY 213


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = -2

Query: 683 ENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDKL 504
           +NK  + ++   + +  V ++A++A I+H KS  + D    +   + +  NF  + +DKL
Sbjct: 41  DNKPSIQEVVRGIPQNRVRNWAVIAHIDHGKSTLS-DCILKLTGVINEH-NFRNQFLDKL 98

Query: 503 ETTLR 489
           E   R
Sbjct: 99  EVERR 103


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = -2

Query: 581  TVDIKATMQKFLKQQINFYKKIVD----KLETTLRYYD 480
            ++D+K  + +FL Q  +++ KIVD    + + TL +Y+
Sbjct: 1134 SLDLKTQISEFLSQLCSYFTKIVDGTVIENDKTLDFYE 1171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,589
Number of Sequences: 5004
Number of extensions: 54266
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)