Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10m17
(687 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC067860-1|AAH67860.1| 624|Homo sapiens SNAG1 protein protein. 68 4e-11
BC060791-1|AAH60791.1| 624|Homo sapiens SNAG1 protein protein. 68 4e-11
EF219141-1|ABN09670.1| 574|Homo sapiens sorting nexin 30 protein. 66 1e-10
BC018775-1|AAH18775.1| 574|Homo sapiens SH3 and PX domain conta... 66 1e-10
AK091291-1|BAC03628.1| 187|Homo sapiens protein ( Homo sapiens ... 66 1e-10
BC005022-1|AAH05022.1| 595|Homo sapiens sorting nexin 9 protein. 57 7e-08
BC001084-1|AAH01084.3| 283|Homo sapiens SNX9 protein protein. 57 7e-08
AL391863-1|CAI15180.1| 595|Homo sapiens sorting nexin 9 protein. 57 7e-08
AL139330-2|CAI12979.1| 595|Homo sapiens sorting nexin 9 protein. 57 7e-08
AL035634-2|CAI20465.1| 595|Homo sapiens sorting nexin 9 protein. 57 7e-08
AF172847-1|AAL54871.1| 595|Homo sapiens sorting nexin 9 protein. 57 7e-08
AF131214-1|AAF04473.1| 595|Homo sapiens SH3 and PX domain-conta... 57 7e-08
AF121859-1|AAD27832.1| 595|Homo sapiens sorting nexin 9 protein. 57 7e-08
AF076957-1|AAD43001.1| 395|Homo sapiens SDP1 protein protein. 57 7e-08
X66975-1|CAA47386.1| 557|Homo sapiens nuclear ribonucleoprotein... 31 2.9
X65372-1|CAA46444.1| 557|Homo sapiens polypirimidine tract bin... 31 2.9
X65371-1|CAA46443.1| 550|Homo sapiens polypirimidine tract bin... 31 2.9
X62006-1|CAA43973.1| 531|Homo sapiens polypirimidine tract bin... 31 2.9
X60648-1|CAA43056.1| 531|Homo sapiens polypyrimidine tract-bind... 31 2.9
BT006819-1|AAP35465.1| 557|Homo sapiens polypyrimidine tract bi... 31 2.9
BC013694-1|AAH13694.1| 557|Homo sapiens polypyrimidine tract bi... 31 2.9
BC004383-1|AAH04383.1| 531|Homo sapiens polypyrimidine tract bi... 31 2.9
BC002397-1|AAH02397.1| 557|Homo sapiens polypyrimidine tract bi... 31 2.9
AC006273-1|AAC99798.1| 531|Homo sapiens PTB_HUMAN protein. 31 2.9
AB208910-1|BAD92147.1| 329|Homo sapiens polypyrimidine tract-bi... 31 2.9
>BC067860-1|AAH67860.1| 624|Homo sapiens SNAG1 protein protein.
Length = 624
Score = 67.7 bits (158), Expect = 4e-11
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = -2
Query: 683 ENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDKL 504
E KMEV + + + R + IS+A LAEI+HF R D K+ MQ FL+QQI F++K+ KL
Sbjct: 555 EGKMEVQKADGIQDRCNTISFATLAEIHHFHQIRVRDFKSQMQHFLQQQIIFFQKVTQKL 614
Query: 503 ETTLRYYD 480
E L YD
Sbjct: 615 EEALHKYD 622
>BC060791-1|AAH60791.1| 624|Homo sapiens SNAG1 protein protein.
Length = 624
Score = 67.7 bits (158), Expect = 4e-11
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = -2
Query: 683 ENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDKL 504
E KMEV + + + R + IS+A LAEI+HF R D K+ MQ FL+QQI F++K+ KL
Sbjct: 555 EGKMEVQKADGIQDRCNTISFATLAEIHHFHQIRVRDFKSQMQHFLQQQIIFFQKVTQKL 614
Query: 503 ETTLRYYD 480
E L YD
Sbjct: 615 EEALHKYD 622
>EF219141-1|ABN09670.1| 574|Homo sapiens sorting nexin 30 protein.
Length = 574
Score = 66.1 bits (154), Expect = 1e-10
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = -2
Query: 683 ENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDKL 504
E +M + + + RR V+ +AL AE+NHF R +D K MQ +L+QQI FY+++ +L
Sbjct: 505 EGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQL 564
Query: 503 ETTLRYYDD 477
E TLR YD+
Sbjct: 565 EKTLRMYDN 573
>BC018775-1|AAH18775.1| 574|Homo sapiens SH3 and PX domain
containing 3 protein.
Length = 574
Score = 66.1 bits (154), Expect = 1e-10
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = -2
Query: 683 ENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDKL 504
E +M + + + RR V+ +AL AE+NHF R +D K MQ +L+QQI FY+++ +L
Sbjct: 505 EGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQL 564
Query: 503 ETTLRYYDD 477
E TLR YD+
Sbjct: 565 EKTLRMYDN 573
>AK091291-1|BAC03628.1| 187|Homo sapiens protein ( Homo sapiens
cDNA FLJ33972 fis, clone DFNES2001647, weakly similar to
Homo sapiens SDP1 protein mRNA. ).
Length = 187
Score = 66.1 bits (154), Expect = 1e-10
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = -2
Query: 683 ENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDKL 504
E +M + + + RR V+ +AL AE+NHF R +D K MQ +L+QQI FY+++ +L
Sbjct: 118 EGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQL 177
Query: 503 ETTLRYYDD 477
E TLR YD+
Sbjct: 178 EKTLRMYDN 186
>BC005022-1|AAH05022.1| 595|Homo sapiens sorting nexin 9 protein.
Length = 595
Score = 56.8 bits (131), Expect = 7e-08
Identities = 24/65 (36%), Positives = 41/65 (63%)
Frame = -2
Query: 686 AENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDK 507
A +K+ + +++R ++SYAL AE+NHF S R D + ++ +L+QQ+ FY+ I +K
Sbjct: 525 ATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEK 584
Query: 506 LETTL 492
L L
Sbjct: 585 LRQAL 589
>BC001084-1|AAH01084.3| 283|Homo sapiens SNX9 protein protein.
Length = 283
Score = 56.8 bits (131), Expect = 7e-08
Identities = 24/65 (36%), Positives = 41/65 (63%)
Frame = -2
Query: 686 AENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDK 507
A +K+ + +++R ++SYAL AE+NHF S R D + ++ +L+QQ+ FY+ I +K
Sbjct: 213 ATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEK 272
Query: 506 LETTL 492
L L
Sbjct: 273 LRQAL 277
>AL391863-1|CAI15180.1| 595|Homo sapiens sorting nexin 9 protein.
Length = 595
Score = 56.8 bits (131), Expect = 7e-08
Identities = 24/65 (36%), Positives = 41/65 (63%)
Frame = -2
Query: 686 AENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDK 507
A +K+ + +++R ++SYAL AE+NHF S R D + ++ +L+QQ+ FY+ I +K
Sbjct: 525 ATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEK 584
Query: 506 LETTL 492
L L
Sbjct: 585 LRQAL 589
>AL139330-2|CAI12979.1| 595|Homo sapiens sorting nexin 9 protein.
Length = 595
Score = 56.8 bits (131), Expect = 7e-08
Identities = 24/65 (36%), Positives = 41/65 (63%)
Frame = -2
Query: 686 AENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDK 507
A +K+ + +++R ++SYAL AE+NHF S R D + ++ +L+QQ+ FY+ I +K
Sbjct: 525 ATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEK 584
Query: 506 LETTL 492
L L
Sbjct: 585 LRQAL 589
>AL035634-2|CAI20465.1| 595|Homo sapiens sorting nexin 9 protein.
Length = 595
Score = 56.8 bits (131), Expect = 7e-08
Identities = 24/65 (36%), Positives = 41/65 (63%)
Frame = -2
Query: 686 AENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDK 507
A +K+ + +++R ++SYAL AE+NHF S R D + ++ +L+QQ+ FY+ I +K
Sbjct: 525 ATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEK 584
Query: 506 LETTL 492
L L
Sbjct: 585 LRQAL 589
>AF172847-1|AAL54871.1| 595|Homo sapiens sorting nexin 9 protein.
Length = 595
Score = 56.8 bits (131), Expect = 7e-08
Identities = 24/65 (36%), Positives = 41/65 (63%)
Frame = -2
Query: 686 AENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDK 507
A +K+ + +++R ++SYAL AE+NHF S R D + ++ +L+QQ+ FY+ I +K
Sbjct: 525 ATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEK 584
Query: 506 LETTL 492
L L
Sbjct: 585 LRQAL 589
>AF131214-1|AAF04473.1| 595|Homo sapiens SH3 and PX
domain-containing protein SH3PX1 protein.
Length = 595
Score = 56.8 bits (131), Expect = 7e-08
Identities = 24/65 (36%), Positives = 41/65 (63%)
Frame = -2
Query: 686 AENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDK 507
A +K+ + +++R ++SYAL AE+NHF S R D + ++ +L+QQ+ FY+ I +K
Sbjct: 525 ATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEK 584
Query: 506 LETTL 492
L L
Sbjct: 585 LRQAL 589
>AF121859-1|AAD27832.1| 595|Homo sapiens sorting nexin 9 protein.
Length = 595
Score = 56.8 bits (131), Expect = 7e-08
Identities = 24/65 (36%), Positives = 41/65 (63%)
Frame = -2
Query: 686 AENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDK 507
A +K+ + +++R ++SYAL AE+NHF S R D + ++ +L+QQ+ FY+ I +K
Sbjct: 525 ATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEK 584
Query: 506 LETTL 492
L L
Sbjct: 585 LRQAL 589
>AF076957-1|AAD43001.1| 395|Homo sapiens SDP1 protein protein.
Length = 395
Score = 56.8 bits (131), Expect = 7e-08
Identities = 24/65 (36%), Positives = 41/65 (63%)
Frame = -2
Query: 686 AENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQINFYKKIVDK 507
A +K+ + +++R ++SYAL AE+NHF S R D + ++ +L+QQ+ FY+ I +K
Sbjct: 325 ATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEK 384
Query: 506 LETTL 492
L L
Sbjct: 385 LRQAL 389
>X66975-1|CAA47386.1| 557|Homo sapiens nuclear ribonucleoprotein
protein.
Length = 557
Score = 31.5 bits (68), Expect = 2.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 129 LHKIFTSYFSICKNKTTSKQNNHNIV--YVQSEISSHHKFIYNNVQIYLACVVCYVLCSK 302
LH+IF+ + ++ K T +K N + Y + H K + IY AC + SK
Sbjct: 200 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259
Query: 303 LES-NSKF 323
L S N K+
Sbjct: 260 LTSLNVKY 267
>X65372-1|CAA46444.1| 557|Homo sapiens polypirimidine tract
binding protein protein.
Length = 557
Score = 31.5 bits (68), Expect = 2.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 129 LHKIFTSYFSICKNKTTSKQNNHNIV--YVQSEISSHHKFIYNNVQIYLACVVCYVLCSK 302
LH+IF+ + ++ K T +K N + Y + H K + IY AC + SK
Sbjct: 200 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259
Query: 303 LES-NSKF 323
L S N K+
Sbjct: 260 LTSLNVKY 267
>X65371-1|CAA46443.1| 550|Homo sapiens polypirimidine tract
binding protein protein.
Length = 550
Score = 31.5 bits (68), Expect = 2.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 129 LHKIFTSYFSICKNKTTSKQNNHNIV--YVQSEISSHHKFIYNNVQIYLACVVCYVLCSK 302
LH+IF+ + ++ K T +K N + Y + H K + IY AC + SK
Sbjct: 200 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259
Query: 303 LES-NSKF 323
L S N K+
Sbjct: 260 LTSLNVKY 267
>X62006-1|CAA43973.1| 531|Homo sapiens polypirimidine tract
binding protein protein.
Length = 531
Score = 31.5 bits (68), Expect = 2.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 129 LHKIFTSYFSICKNKTTSKQNNHNIV--YVQSEISSHHKFIYNNVQIYLACVVCYVLCSK 302
LH+IF+ + ++ K T +K N + Y + H K + IY AC + SK
Sbjct: 200 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259
Query: 303 LES-NSKF 323
L S N K+
Sbjct: 260 LTSLNVKY 267
>X60648-1|CAA43056.1| 531|Homo sapiens polypyrimidine tract-binding
protein (pPTB) protein.
Length = 531
Score = 31.5 bits (68), Expect = 2.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 129 LHKIFTSYFSICKNKTTSKQNNHNIV--YVQSEISSHHKFIYNNVQIYLACVVCYVLCSK 302
LH+IF+ + ++ K T +K N + Y + H K + IY AC + SK
Sbjct: 200 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259
Query: 303 LES-NSKF 323
L S N K+
Sbjct: 260 LTSLNVKY 267
>BT006819-1|AAP35465.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 31.5 bits (68), Expect = 2.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 129 LHKIFTSYFSICKNKTTSKQNNHNIV--YVQSEISSHHKFIYNNVQIYLACVVCYVLCSK 302
LH+IF+ + ++ K T +K N + Y + H K + IY AC + SK
Sbjct: 200 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259
Query: 303 LES-NSKF 323
L S N K+
Sbjct: 260 LTSLNVKY 267
>BC013694-1|AAH13694.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 31.5 bits (68), Expect = 2.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 129 LHKIFTSYFSICKNKTTSKQNNHNIV--YVQSEISSHHKFIYNNVQIYLACVVCYVLCSK 302
LH+IF+ + ++ K T +K N + Y + H K + IY AC + SK
Sbjct: 200 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259
Query: 303 LES-NSKF 323
L S N K+
Sbjct: 260 LTSLNVKY 267
>BC004383-1|AAH04383.1| 531|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 531
Score = 31.5 bits (68), Expect = 2.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 129 LHKIFTSYFSICKNKTTSKQNNHNIV--YVQSEISSHHKFIYNNVQIYLACVVCYVLCSK 302
LH+IF+ + ++ K T +K N + Y + H K + IY AC + SK
Sbjct: 200 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259
Query: 303 LES-NSKF 323
L S N K+
Sbjct: 260 LTSLNVKY 267
>BC002397-1|AAH02397.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 31.5 bits (68), Expect = 2.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 129 LHKIFTSYFSICKNKTTSKQNNHNIV--YVQSEISSHHKFIYNNVQIYLACVVCYVLCSK 302
LH+IF+ + ++ K T +K N + Y + H K + IY AC + SK
Sbjct: 200 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259
Query: 303 LES-NSKF 323
L S N K+
Sbjct: 260 LTSLNVKY 267
>AC006273-1|AAC99798.1| 531|Homo sapiens PTB_HUMAN protein.
Length = 531
Score = 31.5 bits (68), Expect = 2.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 129 LHKIFTSYFSICKNKTTSKQNNHNIV--YVQSEISSHHKFIYNNVQIYLACVVCYVLCSK 302
LH+IF+ + ++ K T +K N + Y + H K + IY AC + SK
Sbjct: 200 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259
Query: 303 LES-NSKF 323
L S N K+
Sbjct: 260 LTSLNVKY 267
>AB208910-1|BAD92147.1| 329|Homo sapiens polypyrimidine
tract-binding protein 1 isoform c variant protein.
Length = 329
Score = 31.5 bits (68), Expect = 2.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 129 LHKIFTSYFSICKNKTTSKQNNHNIV--YVQSEISSHHKFIYNNVQIYLACVVCYVLCSK 302
LH+IF+ + ++ K T +K N + Y + H K + IY AC + SK
Sbjct: 217 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 276
Query: 303 LES-NSKF 323
L S N K+
Sbjct: 277 LTSLNVKY 284
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,903,013
Number of Sequences: 237096
Number of extensions: 1513377
Number of successful extensions: 2675
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2675
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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