Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10m16
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    32   0.095
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    28   1.2  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.7  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   4.7  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    25   8.2  

>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 31.9 bits (69), Expect = 0.095
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = -3

Query: 591 SETGVKMQQLATELEELKQRRQRTQLEIAGMENMTLRQRFQEILLTINKEIIYK 430
           S++  + QQL  ELE +KQ R+R Q+ +   +N  L Q  +E  +    E++ K
Sbjct: 161 SDSEDETQQLLRELENIKQERKREQM-LQEEKNRALEQEKREREIAFGNELLNK 213


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 461 SSLSTRK*FIKKWNTKNYLN-SSN*CFLNCIMHIL 360
           +S ST K  +K  + K   N S N CFLNC++  L
Sbjct: 34  TSPSTGKRLVKNASIKGLYNVSGNDCFLNCVLQSL 68


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +3

Query: 36   NYLKLYLKFVN*HELI*NLSYFIFTIHFNNIVIGLLQFHYFIANMILTYFHN*CIKCGYC 215
            +++K  LK +   E+  NL+     +HF  +  GL      + + + + F+N C+  G C
Sbjct: 1166 HFMKFVLKKITSMEV--NLNVLTRELHFKFVSFGLRIAENLLNSPLGSRFYNLCVDAGLC 1223


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = -3

Query: 624 QYSVDDYLKAPSETGVKMQQLATELEELKQRRQRTQLEIAGMENMTLRQRFQEILLTINK 445
           Q+S + Y+    +            E + QRRQ  Q E    E    R+R Q  ++T  K
Sbjct: 308 QHSFEQYIHEIKKISNISDARRLRSELMVQRRQLEQTEAFDFEFKQYRERLQIAIITAEK 367

Query: 444 EI 439
            I
Sbjct: 368 RI 369


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 553 IGRTETTPPKNATGDSWNGKYD 488
           IGR    P KN+ G+ + G YD
Sbjct: 286 IGRDHAGPGKNSQGEDFYGPYD 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,340
Number of Sequences: 5004
Number of extensions: 50605
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)