Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10m16
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0714 + 27496678-27497392,27499080-27499138,27499179-27499370     31   1.2  
03_01_0304 - 2378657-2378704,2378790-2378795,2378860-2379039,237...    28   8.6  

>04_04_0714 + 27496678-27497392,27499080-27499138,27499179-27499370
          Length = 321

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/78 (19%), Positives = 38/78 (48%)
 Frame = -3

Query: 696 C*TLNELIMTLLKNGKVVAHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQRTQ 517
           C +LN    + + +G       G +    D+LK P+  GV+M+     + E+++ R++++
Sbjct: 28  CSSLNASSPSSVDSGSAGGGGGGKKRPRSDHLKHPTYRGVRMRSWGKWVSEIREPRKKSR 87

Query: 516 LEIAGMENMTLRQRFQEI 463
           + +   +   +  R  ++
Sbjct: 88  IWLGTFDTAEMAARAHDV 105


>03_01_0304 -
           2378657-2378704,2378790-2378795,2378860-2379039,
           2379145-2379327,2379549-2379632,2379748-2379873,
           2379964-2380245,2380326-2380496,2380828-2380989,
           2381501-2381564,2382040-2382221
          Length = 495

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -3

Query: 681 ELIMTLLKNGKVVAHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQRTQLEIA 505
           ELI  +++NGK  A +  + +SVD + +  S +G K+             R+R   + A
Sbjct: 132 ELITKIMENGKAYAMEGDVYFSVDTFPEYLSLSGRKLDHNLAGSRVAVDTRKRNPADFA 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,900,355
Number of Sequences: 37544
Number of extensions: 259493
Number of successful extensions: 544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)