Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10m16
(719 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR536504-1|CAG38742.1| 346|Homo sapiens USF2 protein. 36 0.15
Y07661-1|CAA68942.1| 346|Homo sapiens USF2 protein. 36 0.19
X90826-1|CAA62341.1| 346|Homo sapiens USF2a, USF2b protein prot... 36 0.19
X90825-1|CAA62340.1| 279|Homo sapiens USF2a, USF2b protein prot... 36 0.19
S50537-1|AAB24368.1| 234|Homo sapiens upstream stimulatory fact... 36 0.19
BC049821-1|AAH49821.1| 346|Homo sapiens upstream transcription ... 36 0.19
AY147880-1|AAN63092.1| 215|Homo sapiens upstream stimulatory fa... 36 0.19
AD000684-2|AAB51179.1| 346|Homo sapiens upstream stimulatory fa... 36 0.19
X58531-1|CAA41418.1| 2628|Homo sapiens laminin A chain protein. 34 0.45
>CR536504-1|CAG38742.1| 346|Homo sapiens USF2 protein.
Length = 346
Score = 35.9 bits (79), Expect = 0.15
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 657 NGKVVAHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQ--RTQLEIAGMENMTL 484
N K A K G+ DY++ +T +MQ+ E E L+ + R Q+E EN L
Sbjct: 269 NSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLRMDNELLRQQIEELKNENALL 328
Query: 483 RQRFQE 466
R + Q+
Sbjct: 329 RAQLQQ 334
>Y07661-1|CAA68942.1| 346|Homo sapiens USF2 protein.
Length = 346
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 657 NGKVVAHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQ--RTQLEIAGMENMTL 484
N K A K G+ DY++ +T +MQ+ E E L+ + R Q+E EN L
Sbjct: 269 NSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALL 328
Query: 483 RQRFQE 466
R + Q+
Sbjct: 329 RAQLQQ 334
>X90826-1|CAA62341.1| 346|Homo sapiens USF2a, USF2b protein
protein.
Length = 346
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 657 NGKVVAHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQ--RTQLEIAGMENMTL 484
N K A K G+ DY++ +T +MQ+ E E L+ + R Q+E EN L
Sbjct: 269 NSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALL 328
Query: 483 RQRFQE 466
R + Q+
Sbjct: 329 RAQLQQ 334
>X90825-1|CAA62340.1| 279|Homo sapiens USF2a, USF2b protein
protein.
Length = 279
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 657 NGKVVAHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQ--RTQLEIAGMENMTL 484
N K A K G+ DY++ +T +MQ+ E E L+ + R Q+E EN L
Sbjct: 202 NSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALL 261
Query: 483 RQRFQE 466
R + Q+
Sbjct: 262 RAQLQQ 267
>S50537-1|AAB24368.1| 234|Homo sapiens upstream stimulatory factor
protein.
Length = 234
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 657 NGKVVAHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQ--RTQLEIAGMENMTL 484
N K A K G+ DY++ +T +MQ+ E E L+ + R Q+E EN L
Sbjct: 157 NSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALL 216
Query: 483 RQRFQE 466
R + Q+
Sbjct: 217 RAQLQQ 222
>BC049821-1|AAH49821.1| 346|Homo sapiens upstream transcription
factor 2, c-fos interacting protein.
Length = 346
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 657 NGKVVAHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQ--RTQLEIAGMENMTL 484
N K A K G+ DY++ +T +MQ+ E E L+ + R Q+E EN L
Sbjct: 269 NSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALL 328
Query: 483 RQRFQE 466
R + Q+
Sbjct: 329 RAQLQQ 334
>AY147880-1|AAN63092.1| 215|Homo sapiens upstream stimulatory
factor 2c protein.
Length = 215
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 657 NGKVVAHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQ--RTQLEIAGMENMTL 484
N K A K G+ DY++ +T +MQ+ E E L+ + R Q+E EN L
Sbjct: 138 NSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALL 197
Query: 483 RQRFQE 466
R + Q+
Sbjct: 198 RAQLQQ 203
>AD000684-2|AAB51179.1| 346|Homo sapiens upstream stimulatory
factor 2 protein.
Length = 346
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 657 NGKVVAHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQ--RTQLEIAGMENMTL 484
N K A K G+ DY++ +T +MQ+ E E L+ + R Q+E EN L
Sbjct: 269 NSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALL 328
Query: 483 RQRFQE 466
R + Q+
Sbjct: 329 RAQLQQ 334
>X58531-1|CAA41418.1| 2628|Homo sapiens laminin A chain protein.
Length = 2628
Score = 34.3 bits (75), Expect = 0.45
Identities = 25/75 (33%), Positives = 37/75 (49%)
Frame = -3
Query: 645 VAHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQRTQLEIAGMENMTLRQRFQE 466
+ K+ L ++D+ P+ T MQQ T L E+ Q R TQL +N TL + E
Sbjct: 1671 IMEKTTLNQTLDEDFLLPNSTLQNMQQNGTSLLEIMQIRDFTQLH----QNATLELKAAE 1726
Query: 465 ILLTINKEIIYKEME 421
LL+ +E K +E
Sbjct: 1727 DLLSQIQENYQKPLE 1741
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,224,336
Number of Sequences: 237096
Number of extensions: 1581016
Number of successful extensions: 6684
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6678
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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