Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10m16
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical ...    31   0.63 
Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z69646-4|CAD36489.1|  611|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z69646-3|CAA93476.2|  630|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U70857-3|AAN84873.1|  950|Caenorhabditis elegans Na/ca exchanger...    28   7.7  
U70857-2|AAM29660.1|  975|Caenorhabditis elegans Na/ca exchanger...    28   7.7  
U70857-1|AAM29661.1|  925|Caenorhabditis elegans Na/ca exchanger...    28   7.7  
AJ001181-1|CAA04574.1|  925|Caenorhabditis elegans sodium-calciu...    28   7.7  
AF497829-1|AAM18107.1|  611|Caenorhabditis elegans putative Na-H...    28   7.7  
AF497828-1|AAM18106.1|  630|Caenorhabditis elegans putative Na-H...    28   7.7  

>AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical
            protein Y37E11AM.1 protein.
          Length = 1037

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = -3

Query: 675  IMTLLKNGKVVAHKSGLQYSVDDYLKAPSETGVKMQQLATELEELK-QRRQRTQLEIAGM 499
            + TLL   K+V      Q S+DD+L+    +    + +  + +E++ +  +    ++ G 
Sbjct: 827  VYTLLVAQKIVIEDDWSQLSIDDFLELRFRSSTDCRSVLLDAKEIRYELTKGLAAKLVGE 886

Query: 498  ENMTLRQRFQEILLTINKEIIYKEME 421
               + R+R  + +  +N+ I+ K +E
Sbjct: 887  AGFSGRRRLAKYIDLLNQSIVEKGIE 912


>Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical
           protein T22A3.6 protein.
          Length = 594

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 509 ISSCVLWRRCFSS-SNSVANC 568
           IS C  WRRCFSS  + +A C
Sbjct: 406 ISGCTFWRRCFSSCQDDLATC 426


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -3

Query: 555 ELEELKQRRQRTQLEIAGMENMTLRQRFQEILLTINKEI 439
           EL+E+K+     QL+ A  +  TL+ ++ E+  TINKE+
Sbjct: 349 ELQEMKEEADE-QLQKAKEDIETLQMKYVELETTINKEV 386


>Z69646-4|CAD36489.1|  611|Caenorhabditis elegans Hypothetical
           protein F57C7.2b protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 474 IFVLKSYFPFQLSPVAFFGGVVSVLPIQLPTVAFLPQFHLVL--LNNHQQSTADHFYELQ 647
           +FVL SY  F ++ V    G+VSVL         + Q H     L++  QS   HF+ + 
Sbjct: 335 LFVLISYISFLVAEVCGLTGIVSVL------FCGIAQAHYTYNNLSDESQSNTKHFFHMV 388

Query: 648 LF 653
            F
Sbjct: 389 SF 390


>Z69646-3|CAA93476.2|  630|Caenorhabditis elegans Hypothetical
           protein F57C7.2a protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 474 IFVLKSYFPFQLSPVAFFGGVVSVLPIQLPTVAFLPQFHLVL--LNNHQQSTADHFYELQ 647
           +FVL SY  F ++ V    G+VSVL         + Q H     L++  QS   HF+ + 
Sbjct: 335 LFVLISYISFLVAEVCGLTGIVSVL------FCGIAQAHYTYNNLSDESQSNTKHFFHMV 388

Query: 648 LF 653
            F
Sbjct: 389 SF 390


>U70857-3|AAN84873.1|  950|Caenorhabditis elegans Na/ca exchangers
           protein 2, isoformd protein.
          Length = 950

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -3

Query: 642 AHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQRTQLEIAGMENMTLRQRFQEI 463
           A+ + ++   + +L      G   Q +ATE EE+K     TQ + A       RQ F E+
Sbjct: 230 AYMADIKLIQNKFLPHRYRRGSHGQMIATEAEEMKMLENGTQGDPALKAFEEHRQEFIEL 289

Query: 462 LLTINKE 442
           +  I K+
Sbjct: 290 MREIRKQ 296


>U70857-2|AAM29660.1|  975|Caenorhabditis elegans Na/ca exchangers
           protein 2, isoforma protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -3

Query: 642 AHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQRTQLEIAGMENMTLRQRFQEI 463
           A+ + ++   + +L      G   Q +ATE EE+K     TQ + A       RQ F E+
Sbjct: 230 AYMADIKLIQNKFLPHRYRRGSHGQMIATEAEEMKMLENGTQGDPALKAFEEHRQEFIEL 289

Query: 462 LLTINKE 442
           +  I K+
Sbjct: 290 MREIRKQ 296


>U70857-1|AAM29661.1|  925|Caenorhabditis elegans Na/ca exchangers
           protein 2, isoformb protein.
          Length = 925

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -3

Query: 642 AHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQRTQLEIAGMENMTLRQRFQEI 463
           A+ + ++   + +L      G   Q +ATE EE+K     TQ + A       RQ F E+
Sbjct: 230 AYMADIKLIQNKFLPHRYRRGSHGQMIATEAEEMKMLENGTQGDPALKAFEEHRQEFIEL 289

Query: 462 LLTINKE 442
           +  I K+
Sbjct: 290 MREIRKQ 296


>AJ001181-1|CAA04574.1|  925|Caenorhabditis elegans sodium-calcium
           exchanger protein.
          Length = 925

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -3

Query: 642 AHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQRTQLEIAGMENMTLRQRFQEI 463
           A+ + ++   + +L      G   Q +ATE EE+K     TQ + A       RQ F E+
Sbjct: 230 AYMADIKLIQNKFLPHRYRRGSHGQMIATEAEEMKMLENGTQGDPALKAFEEHRQEFIEL 289

Query: 462 LLTINKE 442
           +  I K+
Sbjct: 290 MREIRKQ 296


>AF497829-1|AAM18107.1|  611|Caenorhabditis elegans putative Na-H
           exchanger isoform 5b protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 474 IFVLKSYFPFQLSPVAFFGGVVSVLPIQLPTVAFLPQFHLVL--LNNHQQSTADHFYELQ 647
           +FVL SY  F ++ V    G+VSVL         + Q H     L++  QS   HF+ + 
Sbjct: 335 LFVLISYISFLVAEVCGLTGIVSVL------FCGIAQAHYTYNNLSDESQSNTKHFFHMV 388

Query: 648 LF 653
            F
Sbjct: 389 SF 390


>AF497828-1|AAM18106.1|  630|Caenorhabditis elegans putative Na-H
           exchanger isoform 5a protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 474 IFVLKSYFPFQLSPVAFFGGVVSVLPIQLPTVAFLPQFHLVL--LNNHQQSTADHFYELQ 647
           +FVL SY  F ++ V    G+VSVL         + Q H     L++  QS   HF+ + 
Sbjct: 335 LFVLISYISFLVAEVCGLTGIVSVL------FCGIAQAHYTYNNLSDESQSNTKHFFHMV 388

Query: 648 LF 653
            F
Sbjct: 389 SF 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,184,185
Number of Sequences: 27780
Number of extensions: 270922
Number of successful extensions: 695
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)