Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10m14
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    44   3e-05
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    31   0.16 
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    31   0.21 
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    27   2.6  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   4.6  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    26   4.6  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   6.1  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    26   6.1  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   6.1  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   6.1  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   8.0  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   8.0  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
 Frame = -3

Query: 699 KVAVSTXQRDGPQAIH-NQDDCPNYFPNSFSGPQECPRAQRLQPRYNVGGDVDRYDSGQT 523
           K  V    RDGP  ++ NQ + PNY P+S   P    + +  +      G V  +    T
Sbjct: 365 KCPVFNYSRDGPMNVNGNQGNWPNY-PSSIR-PLAKVQYEPDEGHEKWVGQVTYHMDEIT 422

Query: 522 EDNFSQATALYKQVFDDAAKQRA--IANIVDHLKDAAAFIQERAIKIFSQVHPELGNKV 352
           + +F Q  A ++ V      Q+   + N+  HL  A + ++ER   +F++V  ELG ++
Sbjct: 423 DVDFEQPRAFWQNVLGKKPGQQDNFVKNVAGHLSGAISPVRERQYGVFTRVDSELGRRI 481


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
 Frame = +1

Query: 364 KFRMYLREDLDSSFLNKRSSILEVIYYIGNSSLFSCIIKNLFIQCCRLGEVVLSLATIIP 543
           +FRMY  ED+ +S ++  + +  +I  + N   F    KN  ++      + LS+A ++ 
Sbjct: 145 RFRMYRSEDIAASSIDNSTPLACMIATLNNGHTF----KNKVVKALSGTALALSIAGVLG 200

Query: 544 VYISADIVSRLQTLSTW-TFLWSRKRVGEIVRAVVL--IVNSLRSITLXGGNSNFVW 705
            Y+     S   T   +   + S + +GE+++ +     +   +   L    SNF W
Sbjct: 201 FYVIGMEHSTYLTRQVFINSVPSLQHMGELLQCIAFTGAIGITQPKVLVAWASNFAW 257


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = +1

Query: 484 LFIQCCRLGEVVLSLATIIPVYISADIVSRLQTLSTWTFLWSRKRVGEIVRAVVLIVNSL 663
           +F+   ++G +  +L T +   +   IV  LQ +  W + W ++R G + R     + SL
Sbjct: 339 VFVDNYKMGYMGANL-TYLNFLVGVTIVVMLQPIQNWLYRWDKRRHGGVARPEARFLISL 397

Query: 664 RSI 672
            ++
Sbjct: 398 LTV 400


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 367 FRMYLREDLDSSFLNKRSSILEVIYYIGNSSLFSCI-IKNLF 489
           FR YLR+  +  F+      + +  Y+GNS +F  +  KN F
Sbjct: 226 FRTYLRQKPEELFIFTTKFSIVLCAYMGNSQIFPLVSSKNCF 267


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -3

Query: 477  DDAAKQRAIANIVDHLKDAAAFIQERAIKIFSQVHPELGNKVAAG 343
            +D A + A+ ++VD   DA+AF+    I ++ +  P   + +AAG
Sbjct: 882  EDLAPEEAVNDVVD---DASAFVGADEIFLWKRNSPLAADHIAAG 923


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +2

Query: 440 TILAIARCLAASSKTCLYSAVAWEKLSSVWPLSYRS 547
           +++ +  CL   S  C +  + W  +   +P+ YRS
Sbjct: 366 SVMIVFSCLFLFSYCCSWGPMGWVIVGETFPIRYRS 401


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 3   INIGTRFYSLKKAKLYNFFLFQNTEFTPIKFTS 101
           I +G RFYS  + K ++ F   N+   P  FTS
Sbjct: 509 IFVGKRFYSTNRHKAFSRFADFNSHRFPCIFTS 541


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 443 ILAIARCLAASSKTCLYSAVAWEKLSSVWPLSYRS 547
           ++ +  CL   S  C +  + W  +   +P+ YRS
Sbjct: 367 VMIVFSCLFLFSYCCSWGPMGWVIVGETFPIRYRS 401


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 3   INIGTRFYSLKKAKLYNFFLFQNTEFTPIKFTS 101
           I +G RFYS  + K ++ F   N+   P  FTS
Sbjct: 509 IFVGKRFYSTNRHKAFSRFADFNSHRFPCIFTS 541


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 510 SQATALYKQVFDDAAKQRAIANIVDHLKDAAA-FIQERAIKIFSQVHPELGNKVAAGLAP 334
           S  T+   Q+ DD    R+ ++ V+ LKD A  ++Q      F Q  P L +K+ +   P
Sbjct: 16  SLITSRLSQILDDVLDDRSSSHSVEKLKDVAVKYLQ------FCQFQPTLLDKLLSKYVP 69


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 462 QRAIANIVDHLKDAAAFIQERAIK 391
           +R +  I+DHL  +   IQE+A+K
Sbjct: 338 KRILEIIIDHLGSSVPLIQEKALK 361


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
 Frame = +1

Query: 379 LREDLDSS-----FLNKRSSILEVIYYIGNSSLFSC 471
           +R D DS      F NK+ S L+V+  + N   F+C
Sbjct: 127 MRNDFDSKGYVCPFCNKKFSSLDVLSLVTNEGTFAC 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,153
Number of Sequences: 5004
Number of extensions: 62888
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)