Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10m10
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    38   0.001
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    36   0.005
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    33   0.036
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    32   0.084
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    27   2.4  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    26   5.5  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   5.5  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   7.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.3  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   7.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.7  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 22/73 (30%), Positives = 40/73 (54%)
 Frame = -3

Query: 644 VILHAYWLSSCSWRVRAMLHAKSIPFEERPVDIVKTGKQLTEEYRAINPAQKVPALEIDG 465
           ++LH +  +S S R+  ML    +P+E +  D  +   +    Y  ++P  K P +  DG
Sbjct: 2   IVLH-HLKNSRSTRIVWMLEELKVPYEIKVYD--RVDGRAPPAYTKLSPLGKSPIVVDDG 58

Query: 464 VTLVESMAIIQYI 426
           VT +ES AI++++
Sbjct: 59  VTYIESAAILEHL 71


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 9/164 (5%)
 Frame = -3

Query: 608 WRVRAMLHAKSIPFEERPVDIVKTGKQLTEEYRAINPAQKVPAL---EIDGVTLVESMAI 438
           W+V   L   ++ +E+   D  K G+Q  +E+ A+NP  +VP L   + +  T+ ES AI
Sbjct: 16  WKVVLALKELNLSYEQIFYDFQK-GEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAI 74

Query: 437 IQYIE---DTRPEPKLMPDTALQRARMREICETIVSGIQPL-QNFGLKKHLGTEEKFLSF 270
           + Y+    DT  +  L  D   +  ++ +      SG   +    G       E    + 
Sbjct: 75  LIYLADKYDTDRKISLSFDDP-EYYKLIQYLFFQASGQGVIWGQAGWFNFFHHEPVVSAV 133

Query: 269 TKYWTE--RGLQTLNDLLAKTSGAYCIGDQITLADICLVPQIYN 144
           T+Y  E  R L  L D+L      Y + ++ T+AD+  +P  YN
Sbjct: 134 TRYRNEIKRVLGVLEDILKDRD--YLVANKYTIADLSFIPWNYN 175


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = -3

Query: 608 WRVRAMLHAKSIPFEERPVDIVKTGKQLTEEYRAINPAQKVPAL---EIDGVTLVESMAI 438
           W+V   L    + +E R V+  K  +Q + E+ A+NP  +VP L     +  T+ ES AI
Sbjct: 16  WKVVQALKELDLTYETRYVNFSKN-EQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAI 74

Query: 437 IQYIED 420
           + Y+ D
Sbjct: 75  LIYLAD 80


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 31.9 bits (69), Expect = 0.084
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 13/183 (7%)
 Frame = -3

Query: 554 VDIVKT-GKQLTEEYRAINPAQKVPA-LEIDGVTLVESMAIIQYI-EDTRPEPK--LMPD 390
           VD+V+T   + + +  A  P QK+P  +  DG  L E +AI++Y  E  +   K  L P 
Sbjct: 29  VDLVETYPHKFSADLAAKFPLQKLPVFIGADGFELSEVIAIVKYFYEKGKHNDKEGLGPV 88

Query: 389 TALQRARMREICETIVSGIQPLQNF----GL-KKHLGTEEKFLSFTKYWTERGLQTLNDL 225
             ++ A M +    I   I   QN     G+ + ++  EEK    +       L+  N+L
Sbjct: 89  NEVEEAEMLKWMCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNEL 148

Query: 224 LAKTSGAYCIGDQITLADI---CLVPQIYNGVSRHKLDLKTYPIVSKVYENLLKEELFQA 54
           +   +  Y +GD+ TLAD+    L+   +N +   K   K  P +++ Y  +  +   + 
Sbjct: 149 VKDRT--YLVGDRFTLADLFFGSLLRIFFNSIIDEK-TRKELPHLTRYYITMFHQAKLET 205

Query: 53  THP 45
             P
Sbjct: 206 YFP 208


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 230 DLLAKTSGAYCIGDQITLADICLVP 156
           DL  K  GAYC   ++ + D+C+ P
Sbjct: 117 DLKKKIQGAYCSIAELFMTDLCMQP 141


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 89  YENLLKEELFQATHPKATK 33
           Y  L KEE+  A+HP+A K
Sbjct: 294 YTALTKEEILHASHPRACK 312


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -3

Query: 443 AIIQYIEDTRPEPKLMPDTALQRARMREICETIVSGIQPLQNFGLKKHLGTEE 285
           ++ +Y + +     L+P        +  IC  I SG+  L N G+  H  T E
Sbjct: 460 SVFEYKDPSTKLSALIPKYFFSELNIASICYEISSGLAFLHNSGIAHHNLTTE 512


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 447 YGDNTVHRRYET*TETHARHSTTTRPYERNMR 352
           +G +  H  Y T    H RHSTT    +R+ R
Sbjct: 149 HGSHRRHEPYRTHLSRHHRHSTTNYHSKRDDR 180


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 329 PLQNFGLKKHLGTEEKFLSFTKYWTERGLQTLNDLLAKTSG 207
           PL    L  HLGT +++ S      ERG+  + DL   T G
Sbjct: 145 PLDYTILDHHLGTIDQWRSTITAMHERGMYLVVDLTVATLG 185


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 448 DSTKVTPSISRAGTFCAGLMALYSSVSCL 534
           +S K+  +IS  G+F A L   YSS S +
Sbjct: 31  ESLKLKSNISHTGSFFANLSQSYSSTSII 59


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 441 DNTVHRRYET*TETHARHSTTTRPYER-NMRDYCIRY 334
           +N  HR Y++ + TH  +   T  Y R  + D C+ +
Sbjct: 621 NNLFHRAYKSSSRTHLANRYFTADYARLQINDMCVSW 657


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,159
Number of Sequences: 5004
Number of extensions: 61956
Number of successful extensions: 191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)