Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10m09
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    72   7e-14
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    64   2e-11

>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 32/54 (59%), Positives = 40/54 (74%)
 Frame = -1

Query: 686 VKXGPFAXHSNQLWSISAVGSWMKINQGLIKMYKKEVLAKFPVIQHVLFGSLLP 525
           +K GPF  HS  L+ I+AV  W K+NQGLIKMY  EVL+K+PV+QH  FG+L P
Sbjct: 265 MKKGPFYEHSPILYDITAVPIWSKVNQGLIKMYDVEVLSKYPVVQHFHFGNLFP 318


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 26/46 (56%), Positives = 35/46 (76%)
 Frame = -1

Query: 662 HSNQLWSISAVGSWMKINQGLIKMYKKEVLAKFPVIQHVLFGSLLP 525
           HS  +  ISAV +W K+N+G+IKMY+ EVL K P++QH LFG L+P
Sbjct: 258 HSPMIDDISAVKTWSKVNEGMIKMYRAEVLGKLPIMQHYLFGHLIP 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,748
Number of Sequences: 5004
Number of extensions: 42774
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)