Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10m09
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical...    83   2e-16
AC024859-17|AAN84887.1|  105|Caenorhabditis elegans Hypothetical...    39   0.004
U80023-11|AAG24044.1|  331|Caenorhabditis elegans Seven tm recep...    29   2.4  

>AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.20a protein.
          Length = 375

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 35/56 (62%), Positives = 42/56 (75%)
 Frame = -1

Query: 683 KXGPFAXHSNQLWSISAVGSWMKINQGLIKMYKKEVLAKFPVIQHVLFGSLLPIRR 516
           K GPF  HSNQLW+ISAV  W K+N G+ KMY+ EVL KFPV+QH++FGSL    R
Sbjct: 248 KTGPFHEHSNQLWNISAVPHWKKVNSGMFKMYEGEVLKKFPVVQHMMFGSLFSFDR 303


>AC024859-17|AAN84887.1|  105|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.20b protein.
          Length = 105

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = -1

Query: 593 MYKKEVLAKFPVIQHVLFGSLLPIRR 516
           MY+ EVL KFPV+QH++FGSL    R
Sbjct: 1   MYEGEVLKKFPVVQHMMFGSLFSFDR 26


>U80023-11|AAG24044.1|  331|Caenorhabditis elegans Seven tm receptor
           protein 47 protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 674 PFAXHSNQLWSISAVGSWMKINQGLIKM 591
           PF  + N+ W   ++ SWM +++G +K+
Sbjct: 64  PFVHNYNKGWIYFSLNSWMNVHEGFLKL 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,935,953
Number of Sequences: 27780
Number of extensions: 229186
Number of successful extensions: 352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)