Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10m06
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 252 2e-67
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 242 2e-64
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 153 1e-37
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 2.0
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 29 4.6
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 6.1
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 8.1
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 252 bits (617), Expect = 2e-67
Identities = 116/203 (57%), Positives = 153/203 (75%)
Frame = -1
Query: 690 VPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 511
VPESVLK R + L + A++ ++ IF RA+QY +EY +E++ ++L R
Sbjct: 11 VPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELVQLKR 70
Query: 510 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 331
+AR +G +YV EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 71 EARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 130
Query: 330 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHE 151
R EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+EDL+HE
Sbjct: 131 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHE 190
Query: 150 IFTVGEKFKYASNFLWPFKLNNP 82
I TVG FK A+NFLWPFKL P
Sbjct: 191 IMTVGPHFKEANNFLWPFKLKAP 213
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = -2
Query: 77 GGWRKKTIHYVDGGDFGNREDKIN 6
GG +KK HYV+GGD GNRED IN
Sbjct: 215 GGLKKKRNHYVEGGDAGNREDYIN 238
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 242 bits (593), Expect = 2e-64
Identities = 113/209 (54%), Positives = 152/209 (72%), Gaps = 6/209 (2%)
Frame = -1
Query: 690 VPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 511
VPESVL+ + + + +I+ ++ IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 510 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 331
+AR +G +YV E KL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 330 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR------LHKHNIICV 169
R EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+ L KH+IIC+
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICI 189
Query: 168 EDLIHEIFTVGEKFKYASNFLWPFKLNNP 82
EDL+HEI TVG FK A+NFLWPFKL P
Sbjct: 190 EDLVHEIMTVGPHFKEANNFLWPFKLKAP 218
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -2
Query: 77 GGWRKKTIHYVDGGDFGNREDKIN 6
GG +KK HYV+GGD GNRE+ IN
Sbjct: 220 GGLKKKRNHYVEGGDAGNRENYIN 243
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 153 bits (371), Expect = 1e-37
Identities = 75/168 (44%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Frame = -1
Query: 576 KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKV 406
KR E +V+E+R KE D +R+ + + R P E +KL F IRI G + P +R++
Sbjct: 50 KRPEDFVREFRNKELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRI 107
Query: 405 LQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIP 226
L+ RL Q+ GVF++ AT+ L + EP+I +G+PNLK+V++L+YK+G L + P
Sbjct: 108 LRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFP 167
Query: 225 ITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNP 82
+TSN ++EK L ++ IIC+EDL+HEI +VG F+ ASNFL PFKL P
Sbjct: 168 LTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASNFLMPFKLKCP 215
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 624 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 484
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 82 WIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFME---PLLNNAVGSD 225
W+ G ++LEL N+E + D+VL + + M LL+N +GSD
Sbjct: 1135 WLSPPSGSVIAAQLLELGKNNEIVTDQVLRQELALVMPKIYSLLSNLIGSD 1185
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 479 PGKPNWHLSSESVVSTKFHRRSVKFCNCLDCAK 381
PG+ NW S +V TK R+S + N +D A+
Sbjct: 100 PGQANWFPDSNLLVDTKGRRQSRRIKNLMDEAE 132
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 316 LHCLGIPQLKECP*VSIQTWIRQAEW 239
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,410,241
Number of Sequences: 37544
Number of extensions: 414087
Number of successful extensions: 950
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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