Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10m06
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   258   3e-69
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    29   4.2  
L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl dip...    28   5.5  
AY597336-1|AAT08468.1|  236|Caenorhabditis elegans isopentenyl-d...    28   5.5  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  258 bits (632), Expect = 3e-69
 Identities = 121/213 (56%), Positives = 157/213 (73%), Gaps = 1/213 (0%)
 Frame = -1

Query: 690 VPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 511
           VPE+VLK             Q  +   +   +KK + FKRAE+YV+EYR  +++ +RL R
Sbjct: 10  VPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKEGLRLKR 69

Query: 510 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 331
           +A  +G++YVP E K+AFV+RIRGINQ+ PK RK LQ+ RLRQINNGVFV+LNKAT+ +L
Sbjct: 70  EAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLL 129

Query: 330 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHE 151
           RI EPY+AWGYPN K++ +L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+EDL HE
Sbjct: 130 RIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHE 189

Query: 150 IFTVGEKFKYASNFLWPFKLNNP-XWWLAQEDH 55
           I TVG  FK A+NFLWPFKLNNP   W  + +H
Sbjct: 190 IATVGPHFKEATNFLWPFKLNNPTGGWTKKTNH 222



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = -2

Query: 77  GGWRKKTIHYVDGGDFGNREDKIN 6
           GGW KKT H+V+GGDFGNRED+IN
Sbjct: 214 GGWTKKTNHFVEGGDFGNREDQIN 237


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -2

Query: 596 RRRGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKF 426
           ++R K SR     SR  ASR  +K     K    A +T P +PN +  S S  S ++
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRY 77


>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = -1

Query: 267 YKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLI----HEIFTVGEKFKYASNFLWP 100
           YKR  +K S     +   ++V+      ++I + ++I    H I  V ++F +    LW 
Sbjct: 417 YKRDSSKPSKPSHHVARRNVVQNSSFLFDLISLFNVIPPSLHIIMGVAQRFAFDYLILWA 476

Query: 99  FKLNNPXWWLAQED 58
            +L+NP   L + D
Sbjct: 477 ARLDNPSMQLKRGD 490


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 298 VSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNF 411
           ++PS  RL    H H+ L Q +++ I    Q K++Q F
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFF 533


>L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl
           diphosphate isomeraseprotein 1 protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -1

Query: 171 VEDLIHEIFTVG---EKFKYASNFLWPFKLNNPXWWLAQEDHSLCRRG 37
           +  L HE+   G    KF+ A  +++  ++NN  W   + D++L  RG
Sbjct: 118 IRKLEHELGITGVSLNKFQMAGKYIYRAEMNNAPWGEHELDYALILRG 165


>AY597336-1|AAT08468.1|  236|Caenorhabditis elegans
           isopentenyl-diphosphate isomerase protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -1

Query: 171 VEDLIHEIFTVG---EKFKYASNFLWPFKLNNPXWWLAQEDHSLCRRG 37
           +  L HE+   G    KF+ A  +++  ++NN  W   + D++L  RG
Sbjct: 118 IRKLEHELGITGVSLNKFQMAGKYIYRAEMNNAPWGEHELDYALILRG 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,501,999
Number of Sequences: 27780
Number of extensions: 359069
Number of successful extensions: 1034
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)