Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10l22
         (599 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130539-1|AAI30540.1|  734|Homo sapiens family with sequence si...    31   4.1  
BC130513-1|AAI30514.1|  734|Homo sapiens family with sequence si...    31   4.1  
AY457926-1|AAR20839.1|  734|Homo sapiens cancer associated nucle...    31   4.1  
AF115392-1|AAD23438.1|  346|Homo sapiens retinal homeobox protei...    31   4.1  
BC117331-1|AAI17332.1|  346|Homo sapiens selenoprotein V protein.      29   9.4  
AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein.       29   9.4  
AY324825-1|AAP85542.1|  346|Homo sapiens selenoprotein V protein.      29   9.4  
AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo ...    29   9.4  
AB011536-1|BAA32464.1| 1364|Homo sapiens MEGF2 protein.                29   9.4  

>BC130539-1|AAI30540.1|  734|Homo sapiens family with sequence
           similarity 111, member B protein.
          Length = 734

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 529 IKHSIQDNYHEFQDKSEWIFKYLREEENK 443
           +  +I   Y  F+++++W+ KY REE+ +
Sbjct: 394 LNEAIMHQYPNFKEEAQWVRKYFREEQKR 422


>BC130513-1|AAI30514.1|  734|Homo sapiens family with sequence
           similarity 111, member B protein.
          Length = 734

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 529 IKHSIQDNYHEFQDKSEWIFKYLREEENK 443
           +  +I   Y  F+++++W+ KY REE+ +
Sbjct: 394 LNEAIMHQYPNFKEEAQWVRKYFREEQKR 422


>AY457926-1|AAR20839.1|  734|Homo sapiens cancer associated
           nucleoprotein protein.
          Length = 734

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 529 IKHSIQDNYHEFQDKSEWIFKYLREEENK 443
           +  +I   Y  F+++++W+ KY REE+ +
Sbjct: 394 LNEAIMHQYPNFKEEAQWVRKYFREEQKR 422


>AF115392-1|AAD23438.1|  346|Homo sapiens retinal homeobox protein
           RX protein.
          Length = 346

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 321 QTSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAP 431
           Q+ P +  P P     L +PPL P ++P+ PP  + P
Sbjct: 268 QSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYP 304


>BC117331-1|AAI17332.1|  346|Homo sapiens selenoprotein V protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 303 LVSSGKQTSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATA 428
           L  S   TSP+ + PAPA I  L+  P    +  + PP A A
Sbjct: 50  LTPSPAGTSPLVLTPAPAQIPTLVPTPALARIPRLVPPPAPA 91


>AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein.
          Length = 4186

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -2

Query: 274  AKQYINIAYNFLYGVKPGDPQLEVKFPELSLPKDFSEFVEMTVSLASSFKQAVMPPP 104
            A++Y     N   G    DP   V  P  S     SE +  + S+ +S   +V+PPP
Sbjct: 2410 ARRYPRYHSNLFRGQDAWDPHTHVLLPSQSPRPSPSEVLPTSSSIENSTTSSVVPPP 2466


>AY324825-1|AAP85542.1|  346|Homo sapiens selenoprotein V protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 303 LVSSGKQTSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATA 428
           L  S   TSP+ + PAPA I  L+  P    +  + PP A A
Sbjct: 50  LTPSPAGTSPLVLTPAPAQIPTLVPTPALARIPRLVPPPAPA 91


>AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo 1
            protein.
          Length = 3312

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -2

Query: 274  AKQYINIAYNFLYGVKPGDPQLEVKFPELSLPKDFSEFVEMTVSLASSFKQAVMPPP 104
            A++Y     N   G    DP   V  P  S     SE +  + S+ +S   +V+PPP
Sbjct: 2340 ARRYPRYHSNLFRGQDAWDPHTHVLLPSQSPRPSPSEVLPTSSSIENSTTSSVVPPP 2396


>AB011536-1|BAA32464.1| 1364|Homo sapiens MEGF2 protein.
          Length = 1364

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -2

Query: 274 AKQYINIAYNFLYGVKPGDPQLEVKFPELSLPKDFSEFVEMTVSLASSFKQAVMPPP 104
           A++Y     N   G    DP   V  P  S     SE +  + S+ +S   +V+PPP
Sbjct: 392 ARRYPRYHSNLFRGQDAWDPHTHVLLPSQSPRPSPSEVLPTSSSIENSTTSSVVPPP 448


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,756,592
Number of Sequences: 237096
Number of extensions: 1808516
Number of successful extensions: 5430
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5427
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)