Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10l15
(298 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 1.1
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 21 2.4
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 3.2
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 3.2
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 21 3.2
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 21 3.2
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 21 3.2
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 21 3.2
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 3.2
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 21 3.2
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 21 3.2
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 21 3.2
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 21 4.2
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 20 5.6
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 20 5.6
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 20 5.6
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 20 5.6
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 20 7.4
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 20 7.4
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 20 7.4
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 20 7.4
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 19 9.8
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 19 9.8
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 19 9.8
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 19 9.8
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 22.6 bits (46), Expect = 1.1
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = -2
Query: 216 FNKTMNNYSALANKKIKLLDAQIDNLNK 133
F +++ NY + + K+K LDA + + +
Sbjct: 582 FIESLGNYYKIRDSKVKTLDASHNRITE 609
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.4 bits (43), Expect = 2.4
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -2
Query: 279 SSNFLLKRKISTPLTKKNPEVFNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEHEL 100
SS + +R+ S +N E + K Y L N+K KLL+ + ++K+ +E E
Sbjct: 228 SSRYSRERRCSRD---RNRE-YRKKDRQYEKLHNEKEKLLE---ERTSRKRYSRSREREQ 280
Query: 99 R 97
R
Sbjct: 281 R 281
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 195 YSALANKKIKLLDAQIDNLNKKQEQEVKEHE 103
Y L N+K KLL+ + N+K+ +E E
Sbjct: 18 YEKLHNEKEKLLE---ERTNRKRNSRSRERE 45
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 195 YSALANKKIKLLDAQIDNLNKKQEQEVKEHE 103
Y L N+K KLL+ + N+K+ +E E
Sbjct: 18 YEKLHNEKEKLLE---ERTNRKRNSRSRERE 45
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.0 bits (42), Expect = 3.2
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 216 FNKTMNNYSALANKKIKLLDAQID--NLNKKQEQEVKEHE 103
+ K Y L N+K KLL+ + ++ +E+E K ++
Sbjct: 234 YRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQKSYK 273
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.0 bits (42), Expect = 3.2
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 216 FNKTMNNYSALANKKIKLLDAQID--NLNKKQEQEVKEHE 103
+ K Y L N+K KLL+ + ++ +E+E K ++
Sbjct: 245 YRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQKSYK 284
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.0 bits (42), Expect = 3.2
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 216 FNKTMNNYSALANKKIKLLDAQID--NLNKKQEQEVKEHE 103
+ K Y L N+K KLL+ + ++ +E+E K ++
Sbjct: 245 YRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQKSYK 284
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.0 bits (42), Expect = 3.2
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 216 FNKTMNNYSALANKKIKLLDAQID--NLNKKQEQEVKEHE 103
+ K Y L N+K KLL+ + ++ +E+E K ++
Sbjct: 234 YRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQKSYK 273
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.0 bits (42), Expect = 3.2
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 216 FNKTMNNYSALANKKIKLLDAQID--NLNKKQEQEVKEHE 103
+ K Y L N+K KLL+ + ++ +E+E K ++
Sbjct: 245 YRKKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYK 284
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.0 bits (42), Expect = 3.2
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 216 FNKTMNNYSALANKKIKLLDAQID--NLNKKQEQEVKEHE 103
+ K Y L N+K KLL+ + ++ +E+E K ++
Sbjct: 234 YRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQKSYK 273
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.0 bits (42), Expect = 3.2
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 216 FNKTMNNYSALANKKIKLLDAQID--NLNKKQEQEVKEHE 103
+ K Y L N+K KLL+ + ++ +E+E K ++
Sbjct: 250 YRKKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYK 289
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 21.0 bits (42), Expect = 3.2
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 216 FNKTMNNYSALANKKIKLLDAQID--NLNKKQEQEVKEHE 103
+ K Y L N+K KLL+ + ++ +E+E K ++
Sbjct: 245 YKKKDRRYEKLHNEKKKLLEERTSRKRYSRSREREQKSYK 284
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 20.6 bits (41), Expect = 4.2
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = +3
Query: 57 LFF*CQFLIVEVYISVHAPLLLVLVFYLN 143
LF+ F+I S + P ++++ Y N
Sbjct: 337 LFYNTDFIIYSSLSSFYIPCIIMVFLYYN 365
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 20.2 bits (40), Expect = 5.6
Identities = 9/40 (22%), Positives = 19/40 (47%)
Frame = -2
Query: 216 FNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEHELR 97
+ K Y L N+K KLL+ + + +E +++ +
Sbjct: 12 YRKKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYK 51
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 20.2 bits (40), Expect = 5.6
Identities = 9/40 (22%), Positives = 19/40 (47%)
Frame = -2
Query: 216 FNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEHELR 97
+ K Y L N+K KLL+ + + +E +++ +
Sbjct: 12 YRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQNSYK 51
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 20.2 bits (40), Expect = 5.6
Identities = 9/40 (22%), Positives = 19/40 (47%)
Frame = -2
Query: 216 FNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEHELR 97
+ K Y L N+K KLL+ + + +E +++ +
Sbjct: 234 YRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQNSYK 273
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 20.2 bits (40), Expect = 5.6
Identities = 9/40 (22%), Positives = 19/40 (47%)
Frame = -2
Query: 216 FNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEHELR 97
+ K Y L N+K KLL+ + + +E +++ +
Sbjct: 245 YRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQNSYK 284
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 19.8 bits (39), Expect = 7.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = -2
Query: 237 TKKNPEVFNKTMNNY 193
T K P++ + NNY
Sbjct: 75 TSKEPKIISSLSNNY 89
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 19.8 bits (39), Expect = 7.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = -2
Query: 237 TKKNPEVFNKTMNNY 193
T K P++ + NNY
Sbjct: 75 TSKEPKIISSLSNNY 89
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 19.8 bits (39), Expect = 7.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 297 ESETPKSSNFLLKRKISTPLTKKNPEVFNKTM 202
ESE + NFL + KI P P FN +M
Sbjct: 285 ESEHTSTPNFLSEAKIFPP----TPGSFNFSM 312
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 19.8 bits (39), Expect = 7.4
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -2
Query: 240 LTKKNPEVFNKT 205
LT+K PE FN++
Sbjct: 836 LTRKIPEAFNES 847
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 19.4 bits (38), Expect = 9.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +1
Query: 196 IVHCFIEHFWILFGEGCRYFS 258
I+ + H++ +G G YFS
Sbjct: 291 IIQFAVVHYFTKYGSGECYFS 311
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 19.4 bits (38), Expect = 9.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = -2
Query: 105 ELRCTLLQLEIDIKKKVLDSF 43
E C L L +D VLD +
Sbjct: 538 ETYCNLFSLSVDHFNAVLDQY 558
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 19.4 bits (38), Expect = 9.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = -2
Query: 105 ELRCTLLQLEIDIKKKVLDSF 43
E C L L +D VLD +
Sbjct: 506 ETYCNLFSLSVDHFNAVLDQY 526
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 19.4 bits (38), Expect = 9.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -2
Query: 282 KSSNFLLKRKISTPLTKKNPEVF 214
K+ N L ++ LTK PE +
Sbjct: 250 KNLNLSLHASLNHTLTKDQPETY 272
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,714
Number of Sequences: 438
Number of extensions: 1498
Number of successful extensions: 25
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used: 6119169
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
- SilkBase 1999-2023 -