Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10l11
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.2  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 301 WNCIGIIGSKM*YFYHK*YIDEFICFGCILN 209
           WN +G+ G+ + YF    Y    I  G +LN
Sbjct: 442 WNVLGVQGALLSYFIEPIYFHS-IVLGSLLN 471


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 619 AQRQNGQDGDASATTSNQQQGAKPKSNKPVG 527
           A +QNG   + +    N+Q G +   NK  G
Sbjct: 452 ANKQNGNRQNDNRQNDNKQNGNRQNDNKQNG 482



 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 613 RQNGQDGDASATTSNQQQGAKPKSNKPVG 527
           +QNG   + +    N+Q G K   NK  G
Sbjct: 479 KQNGNRQNDNKQNGNRQNGNKQNDNKQNG 507



 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/51 (23%), Positives = 17/51 (33%)
 Frame = -2

Query: 613 RQNGQDGDASATTSNQQQGAKPKSNKPVGTTIETTTNESQA*TSRGRYVWH 461
           +QNG   + +    N+Q G +   NK  G       N           V H
Sbjct: 489 KQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDNQVHH 539



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 613 RQNGQDGDASATTSNQQQGAKPKSNKPVG 527
           RQN    + +    N+Q G +   NK  G
Sbjct: 464 RQNDNKQNGNRQNDNKQNGNRQNDNKQNG 492


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 492 AWLSLVVVSIVVPTGLLLL 548
           A LSLVVV++ + TG  LL
Sbjct: 60  AMLSLVVVTVAISTGEWLL 78


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +3

Query: 543 LLGLAPCCWFDV 578
           ++G  PCCW+ +
Sbjct: 482 MIGYYPCCWWKI 493


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +3

Query: 543 LLGLAPCCWFDV 578
           ++G  PCCW+ +
Sbjct: 535 MIGYYPCCWWKI 546


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 259 KNITSLIQ*YLCSSRLETPLLTFQ 330
           + ++S+   Y C  R E P+++FQ
Sbjct: 644 EEVSSIETNYECGLRFEDPMISFQ 667


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,521
Number of Sequences: 438
Number of extensions: 4010
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)