Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10l10
(377 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF272390-1|AAF78783.1| 1742|Homo sapiens myosin 5c protein. 30 2.2
AF161352-1|AAF28912.1| 290|Homo sapiens HSPC089 protein. 30 2.2
AK022607-1|BAB14126.1| 773|Homo sapiens protein ( Homo sapiens ... 29 5.0
U13616-1|AAA64834.1| 4377|Homo sapiens ankyrin G protein. 28 8.8
BC112223-1|AAI12224.1| 831|Homo sapiens solute carrier family 3... 28 8.8
BC101516-1|AAI01517.1| 831|Homo sapiens solute carrier family 3... 28 8.8
BC040567-1|AAH40567.1| 830|Homo sapiens WD repeat domain 75 pro... 28 8.8
BC029413-1|AAH29413.1| 61|Homo sapiens Unknown (protein for IM... 28 8.8
BC006816-1|AAH06816.1| 248|Homo sapiens WDR75 protein protein. 28 8.8
AL592430-3|CAI40518.1| 4372|Homo sapiens ankyrin 3, node of Ranv... 28 8.8
AL359377-2|CAI41373.1| 4372|Homo sapiens ankyrin 3, node of Ranv... 28 8.8
AL359267-1|CAH73232.1| 4372|Homo sapiens ankyrin 3, node of Ranv... 28 8.8
AL122097-1|CAB59265.1| 705|Homo sapiens hypothetical protein pr... 28 8.8
AK023276-1|BAB14503.1| 551|Homo sapiens protein ( Homo sapiens ... 28 8.8
AK022581-1|BAB14111.1| 782|Homo sapiens protein ( Homo sapiens ... 28 8.8
AC013439-1|AAX93081.1| 830|Homo sapiens unknown protein. 28 8.8
AB033091-1|BAA86579.1| 835|Homo sapiens KIAA1265 protein protein. 28 8.8
>AF272390-1|AAF78783.1| 1742|Homo sapiens myosin 5c protein.
Length = 1742
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = -2
Query: 286 SYVNMTVEKKQNTSSLEHLYNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTTVENKRL 107
SY V + + LEHL D + W + Y + L+ H Q + + +E
Sbjct: 1113 SYDIEDVRSRLSVEDLEHLNEDGELWFA-YEGLKKATRVLESHFQSQKDCYEKEIEALNF 1171
Query: 106 QII-LNNDIALILYRTKNRNHIN 41
+++ L+ +I + + N IN
Sbjct: 1172 KVVHLSQEINHLQKLFREENDIN 1194
>AF161352-1|AAF28912.1| 290|Homo sapiens HSPC089 protein.
Length = 290
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = -2
Query: 286 SYVNMTVEKKQNTSSLEHLYNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTTVENKRL 107
SY V + + LEHL D + W + Y + L+ H Q + + +E
Sbjct: 166 SYDIEDVRSRLSVEDLEHLNEDGELWFA-YEGLKKATRVLESHFQSQKDCYEKEIEALNF 224
Query: 106 QII-LNNDIALILYRTKNRNHIN 41
+++ L+ +I + + N IN
Sbjct: 225 KVVHLSQEINHLQKLFREENDIN 247
>AK022607-1|BAB14126.1| 773|Homo sapiens protein ( Homo sapiens
cDNA FLJ12545 fis, clone NT2RM4000611, weakly similar to
VEGETATIBLE INCOMPATIBILITY PROTEIN HET-E-1. ).
Length = 773
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 169 LQKHRQKENTQFTTTVENKRLQIILNNDIALILYRTKNRNHINTDGLF 26
L KHRQ+++ + T+EN+ +Q+ L +I I H+ F
Sbjct: 699 LGKHRQQQDEKLNETLENELVQLPLTENIPAISEHLHTPAHVLPSAAF 746
>U13616-1|AAA64834.1| 4377|Homo sapiens ankyrin G protein.
Length = 4377
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 274 MTVEKKQNTSSLEHLYNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTT 125
M +E K TSS++ F S D HN + + R KE T TTT
Sbjct: 2201 MELEPKPTTSSIKEKVKAFQMKASSEEDDHN-RVLSKGMRVKEETHITTT 2249
>BC112223-1|AAI12224.1| 831|Homo sapiens solute carrier family 39
(zinc transporter), member 10 protein.
Length = 831
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 338 FCFYCLIRFYFYI*CKFVVREHDS*KETKHEQ 243
FC CL+ F F+ C EHD E H Q
Sbjct: 9 FCLICLLTFIFHH-CNHCHEEHDHGPEALHRQ 39
>BC101516-1|AAI01517.1| 831|Homo sapiens solute carrier family 39
(zinc transporter), member 10 protein.
Length = 831
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 338 FCFYCLIRFYFYI*CKFVVREHDS*KETKHEQ 243
FC CL+ F F+ C EHD E H Q
Sbjct: 9 FCLICLLTFIFHH-CNHCHEEHDHGPEALHRQ 39
>BC040567-1|AAH40567.1| 830|Homo sapiens WD repeat domain 75
protein.
Length = 830
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2
Query: 169 LQKHRQKENTQFTTTVENKRLQIILNNDIALI 74
L KHRQ+++ + T+EN+ +Q+ L +I I
Sbjct: 699 LGKHRQQQDEKLNETLENELVQLPLTENIPAI 730
>BC029413-1|AAH29413.1| 61|Homo sapiens Unknown (protein for
IMAGE:4295552) protein.
Length = 61
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 338 FCFYCLIRFYFYI*CKFVVREHDS*KETKHEQ 243
FC CL+ F F+ C EHD E H Q
Sbjct: 9 FCLICLLTFIFHH-CNHCHEEHDHGPEALHRQ 39
>BC006816-1|AAH06816.1| 248|Homo sapiens WDR75 protein protein.
Length = 248
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2
Query: 169 LQKHRQKENTQFTTTVENKRLQIILNNDIALI 74
L KHRQ+++ + T+EN+ +Q+ L +I I
Sbjct: 117 LGKHRQQQDEKLNETLENELVQLPLTENIPAI 148
>AL592430-3|CAI40518.1| 4372|Homo sapiens ankyrin 3, node of Ranvier
(ankyrin G) protein.
Length = 4372
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 274 MTVEKKQNTSSLEHLYNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTT 125
M +E K TSS++ F S D HN + + R KE T TTT
Sbjct: 2196 MELEPKPTTSSIKEKVKAFQMKASSEEDDHN-RVLSKGMRVKEETHITTT 2244
>AL359377-2|CAI41373.1| 4372|Homo sapiens ankyrin 3, node of Ranvier
(ankyrin G) protein.
Length = 4372
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 274 MTVEKKQNTSSLEHLYNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTT 125
M +E K TSS++ F S D HN + + R KE T TTT
Sbjct: 2196 MELEPKPTTSSIKEKVKAFQMKASSEEDDHN-RVLSKGMRVKEETHITTT 2244
>AL359267-1|CAH73232.1| 4372|Homo sapiens ankyrin 3, node of Ranvier
(ankyrin G) protein.
Length = 4372
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 274 MTVEKKQNTSSLEHLYNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTT 125
M +E K TSS++ F S D HN + + R KE T TTT
Sbjct: 2196 MELEPKPTTSSIKEKVKAFQMKASSEEDDHN-RVLSKGMRVKEETHITTT 2244
>AL122097-1|CAB59265.1| 705|Homo sapiens hypothetical protein
protein.
Length = 705
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2
Query: 169 LQKHRQKENTQFTTTVENKRLQIILNNDIALI 74
L KHRQ+++ + T+EN+ +Q+ L +I I
Sbjct: 574 LGKHRQQQDEKLNETLENELVQLPLTENIPAI 605
>AK023276-1|BAB14503.1| 551|Homo sapiens protein ( Homo sapiens
cDNA FLJ13214 fis, clone NT2RP4001336. ).
Length = 551
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2
Query: 169 LQKHRQKENTQFTTTVENKRLQIILNNDIALI 74
L KHRQ+++ + T+EN+ +Q+ L +I I
Sbjct: 477 LGKHRQQQDEKLNETLENELVQLPLTENIPAI 508
>AK022581-1|BAB14111.1| 782|Homo sapiens protein ( Homo sapiens
cDNA FLJ12519 fis, clone NT2RM2001813. ).
Length = 782
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2
Query: 169 LQKHRQKENTQFTTTVENKRLQIILNNDIALI 74
L KHRQ+++ + T+EN+ +Q+ L +I I
Sbjct: 699 LGKHRQQQDEKLNETLENELVQLPLTENIPAI 730
>AC013439-1|AAX93081.1| 830|Homo sapiens unknown protein.
Length = 830
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2
Query: 169 LQKHRQKENTQFTTTVENKRLQIILNNDIALI 74
L KHRQ+++ + T+EN+ +Q+ L +I I
Sbjct: 699 LGKHRQQQDEKLNETLENELVQLPLTENIPAI 730
>AB033091-1|BAA86579.1| 835|Homo sapiens KIAA1265 protein protein.
Length = 835
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 338 FCFYCLIRFYFYI*CKFVVREHDS*KETKHEQ 243
FC CL+ F F+ C EHD E H Q
Sbjct: 13 FCLICLLTFIFHH-CNHCHEEHDHGPEALHRQ 43
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,889,407
Number of Sequences: 237096
Number of extensions: 542189
Number of successful extensions: 1747
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1747
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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