Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10k21
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   4.9  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   8.6  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 5   STILYQVGVIFCRFSRSSSL 64
           STI+Y  GV F + +R SSL
Sbjct: 299 STIMYSNGVTFPQRNRFSSL 318


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 5   STILYQVGVIFCRFSRSSSL 64
           STI+Y  GV F + +R SSL
Sbjct: 299 STIMYSNGVTFPQRNRFSSL 318


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +3

Query: 276 VSVIMNGMSPYRFLSQFSCLRKP 344
           VSV+ NGM  Y FLS  S LR P
Sbjct: 31  VSVMGNGMVVYIFLSTKS-LRTP 52


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/21 (33%), Positives = 8/21 (38%)
 Frame = +2

Query: 287 HERDVTIPILEPIQLSTQAWW 349
           HE    +P   P    T  WW
Sbjct: 186 HESXFVVPTRVPATCCTTXWW 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,430
Number of Sequences: 438
Number of extensions: 5094
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)