Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10k18
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 5/15 (33%), Positives = 13/15 (86%)
 Frame = +2

Query: 569 HSFVPLCVVQVMSFI 613
           H+++P C++ +MS++
Sbjct: 250 HTYIPTCLIVIMSWV 264


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 13  TLRIPPRRRVLAFDDSFVVIDNGVAPAQ 96
           TL +PPR+R     +S  +  NG+  +Q
Sbjct: 461 TLILPPRKRCKMILESMEIERNGLIASQ 488


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 444 KMCFVIFLYGADQIKLN 394
           ++CF +FL G+ + K N
Sbjct: 187 RLCFQVFLEGSQKRKFN 203


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 444 KMCFVIFLYGADQIKLN 394
           ++CF +FL G+ + K N
Sbjct: 187 RLCFQVFLEGSQKRKFN 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,171
Number of Sequences: 438
Number of extensions: 4395
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)