Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10k09
         (453 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20 pro...   189   4e-48
BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20 p...   189   4e-48
BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20 p...   189   4e-48
AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20 p...   189   4e-48
AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20 p...   126   5e-29
M16276-1|AAA59823.1|  269|Homo sapiens HLA-DRB2 protein.               29   9.8  
AY663414-1|AAU88032.1|  261|Homo sapiens MHC class II antigen pr...    29   9.8  
AY375869-1|AAQ88043.1|  234|Homo sapiens MHC class II antigen pr...    29   9.8  
AY375868-1|AAQ88042.1|  234|Homo sapiens MHC class II antigen pr...    29   9.8  
AF000447-1|AAB86436.1|  255|Homo sapiens MHC class II HLA-DQB1 p...    29   9.8  

>L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  189 bits (460), Expect = 4e-48
 Identities = 92/110 (83%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
 Frame = -2

Query: 329 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 153
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 152 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 3
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVE
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113


>BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  189 bits (460), Expect = 4e-48
 Identities = 92/110 (83%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
 Frame = -2

Query: 329 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 153
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 152 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 3
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVE
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113


>BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  189 bits (460), Expect = 4e-48
 Identities = 92/110 (83%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
 Frame = -2

Query: 329 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 153
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 152 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 3
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVE
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113


>AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  189 bits (460), Expect = 4e-48
 Identities = 92/110 (83%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
 Frame = -2

Query: 329 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 153
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 152 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 3
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVE
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113


>AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20
           protein.
          Length = 60

 Score =  126 bits (303), Expect = 5e-29
 Identities = 57/60 (95%), Positives = 59/60 (98%)
 Frame = -2

Query: 191 KGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 12
           KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV
Sbjct: 1   KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60


>M16276-1|AAA59823.1|  269|Homo sapiens HLA-DRB2 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 209 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 36
           K+ LR+ G +R PT  L +    TP  EG    + F ++  K +    + +E V+ +T
Sbjct: 4   KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60


>AY663414-1|AAU88032.1|  261|Homo sapiens MHC class II antigen
           protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 209 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 36
           K+ LR+ G +R PT  L +    TP  EG    + F ++  K +    + +E V+ +T
Sbjct: 4   KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60


>AY375869-1|AAQ88043.1|  234|Homo sapiens MHC class II antigen
           protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 209 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 36
           K+ LR+ G +R PT  L +    TP  EG    + F ++  K +    + +E V+ +T
Sbjct: 4   KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60


>AY375868-1|AAQ88042.1|  234|Homo sapiens MHC class II antigen
           protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 209 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 36
           K+ LR+ G +R PT  L +    TP  EG    + F ++  K +    + +E V+ +T
Sbjct: 4   KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60


>AF000447-1|AAB86436.1|  255|Homo sapiens MHC class II HLA-DQB1
           protein.
          Length = 255

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 209 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 36
           K+ LR+ G +R PT  L +    TP  EG    + F ++  K +    + +E V+ +T
Sbjct: 1   KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 57


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,883,893
Number of Sequences: 237096
Number of extensions: 1632214
Number of successful extensions: 3315
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3315
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)