Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10k08
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    36   0.008
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    28   1.3  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    28   1.7  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    28   1.7  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    27   2.2  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    27   3.8  
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   6.7  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    26   6.7  
SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|...    26   6.7  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   6.7  

>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
 Frame = -1

Query: 602 SFPFGFLSDYVLKKE---------LISITATRKFNNSVGLFGPAIALIGLSYSPAGNVTM 450
           S P GFL+D  L ++         L S TA   F NSV +   A  L GLS +    V +
Sbjct: 72  SSPIGFLADKFLTRKVPMLIGLIFLTSATALLTFGNSVPMLIVARVLQGLSAAVVWTVGL 131

Query: 449 AVLILTV---VVGLNAGHLTGFMLVHIDMAPNFAG 354
           A+L+  V    VG   G + GF+ +   +AP F G
Sbjct: 132 ALLVDVVGADNVGSTMGGIFGFISLGEIIAPVFGG 166


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 3/149 (2%)
 Frame = -1

Query: 740 IVHCCQAWGFWTLMTEMPSYLKQVLGVDIKANGVMSALPYLAMYLLSFPFGFLSDYVLKK 561
           ++  CQ    + + T +PS LK  LG    A   MS   Y    +  +    LSD    +
Sbjct: 278 VIQFCQDLVLYGISTFLPSILKLELGYSSLAAQYMSVPVYALGGISVYVICLLSDRTNIR 337

Query: 560 ELISITATRKFNNSVGLFGPAIALIGLSYSPAGNVTMAVLILTV--VVGLNAGHLTGFML 387
               I       N  GL G  I L+  + S A  V   ++ L +   V LN         
Sbjct: 338 GWFIIGM-----NFFGLAG-FIILLATTNSAANYVATYLIALPLYPTVALN------ITW 385

Query: 386 VHIDMAPNF-AGTLMGITNCVANIVSIIA 303
           ++ +MAP++   T +G    + N+  +IA
Sbjct: 386 INNNMAPHYRRATALGCNQTIGNLAGVIA 414


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -1

Query: 368 PNFAGTLMGITNCVANIVSIIAPLAAGAVLKDETDANEWRKVFYMASALYIVGNLL 201
           P   G    IT  +A ++ ++   AAGA L        WR +F M   + I G L+
Sbjct: 61  PTSWGNTDYITEELARVLLVVEVFAAGAELPRAYMLRHWRSMFVMLLPVMIFGWLV 116


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 596 PFGFLSDYVL-KKELISITATRKFNNSVGLFGPAIALIGLSY 474
           PF  +SDYV+ K+EL + T T    N   + G  I++IG +Y
Sbjct: 56  PFETISDYVIPKRELCNKTIT-VCTNHYQVIGHPISIIGSNY 96


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 293 AGAVLKDETDANEWRKVFYMASALYIVGNL 204
           +GA+  D TD      VF M++   +VGNL
Sbjct: 60  SGAIYLDPTDGTSTSAVFSMSNGRLVVGNL 89


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 230 SALYIVGNLLFIFFGTSERQKWNDVDENESKDTTSEQRIEKVV 102
           S  +I+G  LF+ FG    ++  +V E++        ++EK++
Sbjct: 88  SITHILGGTLFLIFGVKMLKESKEVRESQQSLENEFDKVEKII 130


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 293 AGAVLKDETDANEWRKVFYMASALYIVGNL 204
           +GA+  D TD      VF M++   +VGNL
Sbjct: 60  SGAIYLDPTDGTSTSAVFSMSNGRLVVGNL 89


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -1

Query: 467 AGNVTMAVLILTVVVGLNAGHLTGFMLVHIDMAPNFAGTLMGITNCVANIVSIIAP 300
           AG   M + I++  V  + GH T  +L+ + +A       M +T+ +  I+S +AP
Sbjct: 363 AGFFFMLMGIVSFAVLTSFGHRTPLILISLCLAMTGCSYGMNLTSTLIAIISSLAP 418


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 645 WRHVGFTLPCYVPVEFSIWFSLRLR 571
           W+   F+   +  V F IW SLRLR
Sbjct: 79  WKTALFSSELFFQVPFFIWVSLRLR 103


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 497 IALIGLSYSPAGNVTMAVLILTVVVGLNAGHLTGFMLVHIDMAPNFAGTLM 345
           IA+ G S +      ++       VGLN G    F ++ +  +P FA T +
Sbjct: 169 IAVDGWSLNMLNPEQLSYASTAQTVGLNTGFFLSFTILLVFTSPEFANTFI 219


>SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 360 RWHIDGHHQLCCQYCIDNCALSRWSST 280
           +W   G+ +LCC  CI   A S++ ST
Sbjct: 91  KWKKPGYEKLCCLRCIQT-AESKFGST 116


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 215  VGNLLFIFFGTSERQKWNDVDENESKDTTSE 123
            V  +LF+ F     +K+ND+    S+DT ++
Sbjct: 989  VAQILFLIFDFFSHRKFNDLSSEISEDTPTD 1019


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,126
Number of Sequences: 5004
Number of extensions: 60347
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)