Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10k08
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    30   0.027
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   4.1  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   5.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 29.9 bits (64), Expect = 0.027
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = -1

Query: 350 LMGITNCVANIVS--IIAPLAAG--AVLKDETDANE-WRKVFYMASALYIVGNLLFIFFG 186
           L G  NC ++I S  +++    G  A + ++TDAN  W  +  +   L + GN+L I   
Sbjct: 152 LNGTVNCTSSIASSGVVSAGECGPAADVDEKTDANSWWALILVIVPCLTLFGNVLVILAV 211

Query: 185 TSER 174
             ER
Sbjct: 212 VRER 215


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 303 RNYRYNIGNTVGDAHQCASEVGSHVNVHQHKAC*M 407
           RN  Y +  T+GDA+   S      N H  + C M
Sbjct: 462 RNRVYKV-ETIGDAYMVVSGAPVKENDHADRVCDM 495


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -3

Query: 318 CIDNCALSRWSSTERRNGR 262
           C  NC L +++  +++NG+
Sbjct: 70  CYFNCVLEKFNVMDKKNGK 88


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 278 SVLLQRLRAQLSIQYWQHSW*CPSMCQRSWEPCQCAPT*SLLDAQHST 421
           +V++Q  ++QL +         PS   ++    QC  T SLL + HST
Sbjct: 661 AVIVQHTQSQLHLHLTSPPARSPSSQAQA---SQCPQTASLLSSTHST 705


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 193 SSGPARDRNGTMSMKMSQR 137
           SSG   DRNG M   M  R
Sbjct: 436 SSGSVIDRNGVMFFNMVTR 454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,397
Number of Sequences: 438
Number of extensions: 4138
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)