Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10k07
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    80   3e-17
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              28   0.11 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   9.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 79.8 bits (188), Expect = 3e-17
 Identities = 73/251 (29%), Positives = 104/251 (41%), Gaps = 14/251 (5%)
 Frame = -1

Query: 723 SRIVGGTATTIDRYPTMAAALFSSNMAQWWQGCGCSILNNRAVLTAAHCII-----XXXX 559
           SRIVGGT T I+ +P MA    +         CG +I++ R VLTAAHCII         
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGMI---CGATIISKRYVLTAAHCIIDENTTKLAI 215

Query: 558 XXXXXXXXXXXXXXXXXVHEVNRHIIHPNYNHRTKD----ADIAIMRTVLRINFVRNTVQ 391
                            +H +N+ IIHP Y+   KD     DIA+++T   I F  + V 
Sbjct: 216 VVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKF-GDKVG 274

Query: 390 PARIAGSNY--NLADNQVVWAAGWGSTRTGSGFAEQLRHVQVWTINQAICRERYSRIDRP 217
           PA +   ++  + A + V    GWG T      +  L+   +  + Q  C + Y      
Sbjct: 275 PACLPFQHFLDSFAGSDVT-VLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYYGN---- 329

Query: 216 ITANMLCS---GWLDVXXXXXXXXXXXGPLYHNGVVVGVCSWGFSCGSAFYPGVNVRVSR 46
           I  N +C+   G                P     V +G+ SWG  CG   YP  N +V  
Sbjct: 330 IMVNAMCAYAKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECGK--YPNGNTKVGS 387

Query: 45  FSSWIQNQCLD 13
           +  WI +Q  D
Sbjct: 388 YIDWIVSQTPD 398


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -2

Query: 254 PFVESDTRE*IDRSLPICCA--PAGLTSAAAISVEVIPVVLYTTTVSSSGCARGDSLV 87
           PF   D R+ +   +  C A  PAG   +  ++V  +    Y T V+     RG+S +
Sbjct: 64  PFRAEDYRQEVHAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDTDVNKEYAIRGNSAI 121


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 261 NQAICRERYSRIDRPITANM 202
           N AI  +RYS I RP+   +
Sbjct: 138 NAAIAYDRYSTIARPLDGKL 157


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 400 ITYEVYP*NCTHDCNISVLCTMIVIRVDDVPV 495
           I Y  YP N   +   S +C M+   + + P+
Sbjct: 174 INYVEYPQNSKRNSEESAICAMLKENMPEFPL 205


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -2

Query: 155 VIPVVLYTTTVSSSGCARGDS---LVEVHSTLE*MFASLASVHGFKT 24
           VIP +LY T  SS+G  +  S   L  + S    M  SL SV   +T
Sbjct: 804 VIPRILYLTWYSSNGDIKVPSTKVLAMISSVKSFMELSLRSVKDRET 850


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 121 RRRGVLVGILLWK 83
           R RG+ + I LWK
Sbjct: 67  RERGITIDIALWK 79


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 121 RRRGVLVGILLWK 83
           R RG+ + I LWK
Sbjct: 10  RERGITIDIALWK 22


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 121 RRRGVLVGILLWK 83
           R RG+ + I LWK
Sbjct: 67  RERGITIDIALWK 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,384
Number of Sequences: 438
Number of extensions: 4814
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)