Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10j22
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   8.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   8.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.0  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 324 VENFKINLYLNLK 362
           VENFK  +YL LK
Sbjct: 478 VENFKGGMYLRLK 490


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 324 VENFKINLYLNLK 362
           VENFK  +YL LK
Sbjct: 478 VENFKGGMYLRLK 490


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 429 YDIISINLIG*PIVVPIF 376
           Y+II+I  I  P+ VPI+
Sbjct: 325 YNIINIEQIPVPVPVPIY 342


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 429 YDIISINLIG*PIVVPIF 376
           Y+II+I  I  P+ VPI+
Sbjct: 336 YNIINIEQIPVPVPVPIY 353


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 429 YDIISINLIG*PIVVPIF 376
           Y+II+I  I  P+ VPI+
Sbjct: 354 YNIINIEQIPVPVPVPIY 371


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 429 YDIISINLIG*PIVVPIF 376
           Y+II+I  I  P+ VPI+
Sbjct: 356 YNIINIEQIPVPVPVPIY 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,624
Number of Sequences: 438
Number of extensions: 3341
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)