Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10j14
(662 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC025275-1|AAH25275.1| 483|Homo sapiens ATPase, H+ transporting... 117 4e-26
AF298777-1|AAG22809.1| 483|Homo sapiens vacuolar ATPase subunit... 117 4e-26
AF132945-1|AAD27720.1| 483|Homo sapiens CGI-11 protein protein. 117 4e-26
AF112204-1|AAF17192.1| 483|Homo sapiens Vacuolar proton pump su... 117 4e-26
AF125105-1|AAL75942.1| 476|Homo sapiens vacuolar proton pump su... 99 2e-20
AY960854-1|AAX59055.1| 579|Homo sapiens keratinocyte proline-ri... 31 3.7
AL353779-4|CAI20978.1| 579|Homo sapiens keratinocyte proline-ri... 31 3.7
Z83131-1|CAI42019.1| 632|Homo sapiens armadillo repeat containi... 30 8.5
BC015926-1|AAH15926.1| 632|Homo sapiens ARMCX2 protein protein. 30 8.5
BC012541-1|AAH12541.1| 632|Homo sapiens armadillo repeat contai... 30 8.5
AF294629-1|AAG23961.1| 410|Homo sapiens aristaless-like 4 protein. 30 8.5
AB011084-1|BAA25438.2| 710|Homo sapiens KIAA0512 protein protein. 30 8.5
>BC025275-1|AAH25275.1| 483|Homo sapiens ATPase, H+ transporting,
lysosomal 50/57kDa, V1 subunit H protein.
Length = 483
Score = 117 bits (281), Expect = 4e-26
Identities = 52/68 (76%), Positives = 58/68 (85%)
Frame = -3
Query: 660 AVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMVHNWEYL 481
AVA +D+GEYVRHYPRGK +IEQLGGKQ VM + H+D VRY ALLAVQKLMVHNWEYL
Sbjct: 408 AVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVHNWEYL 467
Query: 480 GKQLEKEQ 457
GKQL+ EQ
Sbjct: 468 GKQLQSEQ 475
>AF298777-1|AAG22809.1| 483|Homo sapiens vacuolar ATPase subunit H
protein.
Length = 483
Score = 117 bits (281), Expect = 4e-26
Identities = 52/68 (76%), Positives = 58/68 (85%)
Frame = -3
Query: 660 AVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMVHNWEYL 481
AVA +D+GEYVRHYPRGK +IEQLGGKQ VM + H+D VRY ALLAVQKLMVHNWEYL
Sbjct: 408 AVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVHNWEYL 467
Query: 480 GKQLEKEQ 457
GKQL+ EQ
Sbjct: 468 GKQLQSEQ 475
>AF132945-1|AAD27720.1| 483|Homo sapiens CGI-11 protein protein.
Length = 483
Score = 117 bits (281), Expect = 4e-26
Identities = 52/68 (76%), Positives = 58/68 (85%)
Frame = -3
Query: 660 AVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMVHNWEYL 481
AVA +D+GEYVRHYPRGK +IEQLGGKQ VM + H+D VRY ALLAVQKLMVHNWEYL
Sbjct: 408 AVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVHNWEYL 467
Query: 480 GKQLEKEQ 457
GKQL+ EQ
Sbjct: 468 GKQLQSEQ 475
>AF112204-1|AAF17192.1| 483|Homo sapiens Vacuolar proton pump
subunit SFD alpha isoform protein.
Length = 483
Score = 117 bits (281), Expect = 4e-26
Identities = 52/68 (76%), Positives = 58/68 (85%)
Frame = -3
Query: 660 AVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMVHNWEYL 481
AVA +D+GEYVRHYPRGK +IEQLGGKQ VM + H+D VRY ALLAVQKLMVHNWEYL
Sbjct: 408 AVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVHNWEYL 467
Query: 480 GKQLEKEQ 457
GKQL+ EQ
Sbjct: 468 GKQLQSEQ 475
>AF125105-1|AAL75942.1| 476|Homo sapiens vacuolar proton pump
subunit SFD alpha isoform protein.
Length = 476
Score = 98.7 bits (235), Expect = 2e-20
Identities = 45/65 (69%), Positives = 53/65 (81%)
Frame = -3
Query: 660 AVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMVHNWEYL 481
AVA +D+GEYVRHYPRGK +IEQLGGKQ VM + H+D VRY ALLAV +LMVHNWE L
Sbjct: 408 AVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMLHEDQQVRYNALLAVMELMVHNWE-L 466
Query: 480 GKQLE 466
KQ++
Sbjct: 467 AKQMQ 471
>AY960854-1|AAX59055.1| 579|Homo sapiens keratinocyte proline-rich
protein protein.
Length = 579
Score = 31.1 bits (67), Expect = 3.7
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 461 SFSSCLPRYSQL*TISFCT---ASKAS*RTFGSS*LRRYMTRCLPPSCSMMCLPR 616
S+SSC P+Y + S C ++ S +F R +RCLPP + PR
Sbjct: 213 SYSSCFPQYRSRTSFSPCVPQCQTQGSYGSFTEQHRSRSTSRCLPPPRRLQLFPR 267
>AL353779-4|CAI20978.1| 579|Homo sapiens keratinocyte proline-rich
protein protein.
Length = 579
Score = 31.1 bits (67), Expect = 3.7
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 461 SFSSCLPRYSQL*TISFCT---ASKAS*RTFGSS*LRRYMTRCLPPSCSMMCLPR 616
S+SSC P+Y + S C ++ S +F R +RCLPP + PR
Sbjct: 213 SYSSCFPQYRSRTSFSPCVPQCQTQGSYGSFTEQHRSRSTSRCLPPPRRLQLFPR 267
>Z83131-1|CAI42019.1| 632|Homo sapiens armadillo repeat containing,
X-linked 2 protein.
Length = 632
Score = 29.9 bits (64), Expect = 8.5
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -3
Query: 624 HYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMVHNWEYLGK 475
+Y + I +LGG + +++ DP+++ +AL+A+ L N+E G+
Sbjct: 416 NYSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLS-ENYENQGR 464
>BC015926-1|AAH15926.1| 632|Homo sapiens ARMCX2 protein protein.
Length = 632
Score = 29.9 bits (64), Expect = 8.5
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -3
Query: 624 HYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMVHNWEYLGK 475
+Y + I +LGG + +++ DP+++ +AL+A+ L N+E G+
Sbjct: 416 NYSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLS-ENYENQGR 464
>BC012541-1|AAH12541.1| 632|Homo sapiens armadillo repeat
containing, X-linked 2 protein.
Length = 632
Score = 29.9 bits (64), Expect = 8.5
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -3
Query: 624 HYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMVHNWEYLGK 475
+Y + I +LGG + +++ DP+++ +AL+A+ L N+E G+
Sbjct: 416 NYSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLS-ENYENQGR 464
>AF294629-1|AAG23961.1| 410|Homo sapiens aristaless-like 4 protein.
Length = 410
Score = 29.9 bits (64), Expect = 8.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 426 LQPQCQPVCRFVPSPVACRDIPSCEP 503
L QCQP C P AC +PSC P
Sbjct: 314 LPHQCQPACPLRPG--ACLHVPSCPP 337
>AB011084-1|BAA25438.2| 710|Homo sapiens KIAA0512 protein protein.
Length = 710
Score = 29.9 bits (64), Expect = 8.5
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -3
Query: 624 HYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMVHNWEYLGK 475
+Y + I +LGG + +++ DP+++ +AL+A+ L N+E G+
Sbjct: 494 NYSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLS-ENYENQGR 542
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,645,577
Number of Sequences: 237096
Number of extensions: 1714462
Number of successful extensions: 2834
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2832
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -