Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10j09
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   2.0  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    27   2.6  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    26   4.6  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   6.1  

>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = -2

Query: 705 SKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEI-KTP 529
           +K+E  A +A    EE  S        +  A       K  +   V SDA  + +  KT 
Sbjct: 252 AKSESAAGLAAYELEESSSLPAIVHGNNKNARKNIATLKSKIRDIVNSDANVVEQSEKTT 311

Query: 528 EAADAPKLADNPVDEDKPAD 469
           E AD     +  +DE KPAD
Sbjct: 312 EDADEEPETEENLDEFKPAD 331


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 172 VGSGARVNVFAASSGRVSKTV 234
           V SGARV ++ ASS  V KT+
Sbjct: 57  VTSGARVQIYGASSRSVKKTI 77


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = -2

Query: 708 DSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTP 529
           +S   +    +E+SK  KP+ TD            N  K+I++A    S  A  P+  TP
Sbjct: 34  ESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKATP 83

Query: 528 EAADAPKLADNPVD 487
            AA AP  A + VD
Sbjct: 84  -AAVAPVEATSAVD 96


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -2

Query: 678 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPTVESDAAAIPEIKTPEA 523
           A   K+ +PS  +   +A   +  PN VK +  D+ P   +      +I  PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,019
Number of Sequences: 5004
Number of extensions: 31940
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)