Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10j04
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 66 2e-12
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 64 9e-12
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 62 7e-11
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 58 6e-10
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 56 3e-09
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 56 4e-09
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 44 1e-05
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 28 0.76
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 1.8
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 25 5.4
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 25 5.4
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 25 7.1
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2... 25 7.1
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 25 9.4
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 9.4
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 9.4
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 66.5 bits (155), Expect = 2e-12
Identities = 30/90 (33%), Positives = 51/90 (56%)
Frame = -1
Query: 374 IVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESIIAESKGKVVLAKVDIDE 195
+ ++ + +FK V K+ VVVDFFATWC PC+ + P+ E + + KVD+D+
Sbjct: 2 VKQVSDSSEFKSIVCQDKL-VVVDFFATWCGPCKAIAPKFEQ-FSNTYSDATFIKVDVDQ 59
Query: 194 QTDLALDYEVSSVPVLVAIKNGKVQNRLVG 105
+++A + V ++P KNG+ +VG
Sbjct: 60 LSEIAAEAGVHAMPSFFLYKNGEKIEEIVG 89
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 64.5 bits (150), Expect = 9e-12
Identities = 32/107 (29%), Positives = 59/107 (55%)
Frame = -1
Query: 425 KNYGFLRNFSLTASKNDIVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESI 246
+++ R+F+ + + ++S D+ ++ KV VVDF+A WC PC+ L P LE
Sbjct: 2 RSFALRRSFTSSRILRKVNAVESFGDYNTRISADKV-TVVDFYADWCGPCKYLKPFLEK- 59
Query: 245 IAESKGKVVLAKVDIDEQTDLALDYEVSSVPVLVAIKNGKVQNRLVG 105
++E K V+ D+ +D+A V ++P +V + G+ +R+VG
Sbjct: 60 LSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVG 106
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 61.7 bits (143), Expect = 7e-11
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Frame = -1
Query: 374 IVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESI--IAESKGKVVLAKVDI 201
+V++QS ++ + + SK +++F+ATWC C+ L P E + + E V++ K+D
Sbjct: 22 VVELQSLNELENTIRASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDA 81
Query: 200 DEQTDLALDYEVSSVPVLVAI-KNGKVQNRLVGLQDTDKLRKWIEQFASEET 48
D +D+A Y ++ P L+ +G + +D D L QF SE+T
Sbjct: 82 DTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNARDVDSL----TQFVSEKT 129
Score = 48.8 bits (111), Expect = 5e-07
Identities = 23/80 (28%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Frame = -1
Query: 380 NDIVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESI--IAESKGKVVLAKV 207
+++V++ S + F + V++ K V+V+F+A WC C+ L P E++ + +++ V + K+
Sbjct: 140 SNVVELDSLN-FDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKI 198
Query: 206 DIDEQTDLALDYEVSSVPVL 147
+ D D+ +EV+S P +
Sbjct: 199 NADVFADIGRLHEVASFPTI 218
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 58.4 bits (135), Expect = 6e-10
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = -1
Query: 338 KVINSKVPVVVDFFATWCNPCRLLTPRLESIIAE-SKGKVVLAKVDIDEQTDLALDYEVS 162
++I + ++V F+A WC C+ L P ES E K + L +VD E+ DL +Y +
Sbjct: 34 ELITADKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIR 93
Query: 161 SVPVLVAIKNGKVQNRLVGLQDTDKLRKWIEQ 66
P L KNGK ++ G + D L K++ +
Sbjct: 94 GYPTLNVFKNGKQISQYSGPRKHDALVKYMRK 125
Score = 52.8 bits (121), Expect = 3e-08
Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Frame = -1
Query: 410 LRNFSLTASKNDIVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESIIAE-- 237
+++ + S+ D+V + + D+F + V++ V+V+F+A WC C+ L P E + E
Sbjct: 345 IKSQPIPESQEDLVVLVA-DNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYS 403
Query: 236 SKGKVVLAKVDIDEQTDLALDYEVSSVPVLVAIK-NGKVQN-RLVGLQDTDKLRKWIEQF 63
VV+AK+D E D+++ +S P ++ K N KV R G + + L +I++
Sbjct: 404 DDSNVVVAKIDATE-NDISV--SISGFPTIMFFKANDKVNPVRYEGDRTLEDLSAFIDKH 460
Query: 62 ASEE 51
AS E
Sbjct: 461 ASFE 464
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 56.4 bits (130), Expect = 3e-09
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = -1
Query: 314 VVVDFFATWCNPCRLLTPRLESIIAE-SKGKVVLAKVDIDEQTDLALDYEVSSVPVLVAI 138
+ VD +A WC PC+ ++P + ++ + K V AKV++DEQ +A V ++P V
Sbjct: 22 LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFF 81
Query: 137 KNGKVQNRLVGLQDTDKLRKWIEQFASEET 48
+NGK + L G + L++ + +S+ T
Sbjct: 82 ENGKQIDMLTG-ANPQALKEKVALISSKAT 110
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 55.6 bits (128), Expect = 4e-09
Identities = 29/104 (27%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = -1
Query: 371 VKIQSTDDFKEKVINSKVPVVV-DFFATWCNPCRLLTPRLESIIAESKGKVVLAKVDIDE 195
V+I + F+E + N K +++ +F+A W PC+ + + ++K V L K++ ++
Sbjct: 3 VEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFL-KIEAEK 61
Query: 194 QTDLALDYEVSSVPVLVAIKNGKVQNRLVGLQDTDKLRKWIEQF 63
+D+A ++V++VP+ V I KV R+ G + KL+ I+++
Sbjct: 62 FSDIAESFDVNAVPLFVLIHGAKVLARISG-ANPQKLKAAIDEY 104
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 44.0 bits (99), Expect = 1e-05
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Frame = -1
Query: 338 KVINSKVPVVVDFFATWCNPCRLLTPRLESIIAESKGKVVLAKVDIDEQTDLAL--DYEV 165
K + +K P +V F+A WC C+ L P + + + + + VD D + A+ Y+V
Sbjct: 43 KFVKAKGPSLVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQV 102
Query: 164 SSVPVLVAIKNGKVQNRLVGLQ-DTDKLRKWIEQFASEETKAEIK 33
P + + + L + D+ K +++F S+ +++K
Sbjct: 103 QGFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFVSDSIPSKVK 147
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 28.3 bits (60), Expect = 0.76
Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = -1
Query: 524 LLPNNLQYCI-VHCFYKMLTKNITNLFIRNCTLKKNYGFLRNFSLTASKNDIVKIQSTDD 348
L+P ++C+ + + LT + LF+ L+ N + NFS + +++D +
Sbjct: 215 LIPLTQKFCVQLQKLFADLTVSDQMLFLNQLLLEHNTKYPTNFSYSTARDDRITGSLATL 274
Query: 347 FKEKVINSKVPVVVDFFATWCNPCRLLTPRLESI 246
+ ++ +++F+ W P L+ R+E +
Sbjct: 275 LRLNFSSTHFLRLIEFY--WGVPTNLIIKRVEVV 306
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Frame = -1
Query: 191 TDLALDYEVSSV-----PVLVAIKNGKVQNRLVGLQDT 93
TDL +D+++SSV P ++ K+G +Q R+V DT
Sbjct: 91 TDLDVDFDISSVRVTEKPSVLEEKSGVIQFRVVSNDDT 128
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 407 RNFSLTASKNDIVKIQSTDDFKEKVINSKVPV 312
RN + + D+ Q ++F+EK++N +PV
Sbjct: 72 RNPTGDVTATDVYSSQYLNNFQEKLLNGSIPV 103
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = -1
Query: 248 IIAESKGKVVLAKVDIDE-----QTDLALDYEVSSVPVLVAIKNGKVQNRLVGLQDTDKL 84
I+ + G+V++ V D QT +A + VSS+ L +G V ++ L ++ L
Sbjct: 32 IVGQCSGQVMVFDVSTDNHFTLIQTFIAHKHSVSSIVCLPFEADGIVDLSIITLDESGLL 91
Query: 83 RKWI 72
+W+
Sbjct: 92 CQWL 95
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 431 LKKNYGFLRNFSLTASKNDIVKIQSTDDFKEKVI 330
L + GFL NFSL S + K+ S + E+ +
Sbjct: 584 LNASSGFLTNFSLKDSTDRFYKVLSYEKVSERFV 617
>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.0 bits (52), Expect = 7.1
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +1
Query: 127 FPFFIATKTGTELTS*SNAKSVCSSMSTFAK---TTLPLLSAIIDS-RRGVSSLHGL 285
FP IA E S VCS+ ST K TT L+ A + R V S+H L
Sbjct: 28 FPIKIAVDVAKEYLSTKRVALVCSARSTDTKAEGTTTRLIRATEAALRPAVGSVHDL 84
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -1
Query: 275 RLLTPRLESIIAESKGKVVLAKVDIDEQTDLALD 174
+LLTP SIIA G + DI+E DL LD
Sbjct: 409 QLLTP--VSIIASLHGNKEIGVQDIEECNDLFLD 440
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/30 (23%), Positives = 18/30 (60%)
Frame = +1
Query: 190 VCSSMSTFAKTTLPLLSAIIDSRRGVSSLH 279
+CSS F + +P+L +++ + + ++H
Sbjct: 257 ICSSQLPFVEQYMPILPLLLERLKSLQNMH 286
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 24.6 bits (51), Expect = 9.4
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 232 LLSAIIDSRRGVSSLHGLHHVAKKSTTTGTLLLITFSLKSSVLWIFTMSFFD 387
LL +D L G H + +S+ T L + S S++W T FD
Sbjct: 1230 LLEYQLDQTEVYLDLSGTHAASPRSSMTVKPLSLCSSGYESIVWDLTSILFD 1281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,495
Number of Sequences: 5004
Number of extensions: 40878
Number of successful extensions: 147
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -