Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10j02
         (694 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457139-1|CAG33420.1|  333|Homo sapiens SUCLG1 protein.               79   1e-14
BC000504-1|AAH00504.1|  333|Homo sapiens SUCLG1 protein protein.       79   1e-14
AF104921-1|AAD17940.2|  333|Homo sapiens succinyl-CoA synthetase...    79   1e-14
AC096770-1|AAY24107.1|  333|Homo sapiens unknown protein.              79   1e-14

>CR457139-1|CAG33420.1|  333|Homo sapiens SUCLG1 protein.
          Length = 333

 Score = 79.4 bits (187), Expect = 1e-14
 Identities = 37/80 (46%), Positives = 55/80 (68%)
 Frame = -3

Query: 641 SEYLTQYNTGQKAKPVVSFIAGLTAPPGRRMXXXXXXXXXXXXXAMDKIKALEKANVIVT 462
           +E+L Q+N+G  +KPVVSFIAGLTAPPGRRM             A +KI AL+ A V+V+
Sbjct: 254 AEFLKQHNSGPNSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVS 313

Query: 461 RSPAKMGVELHKEMKRLEII 402
            SPA++G  ++KE ++ +++
Sbjct: 314 MSPAQLGTTIYKEFEKRKML 333


>BC000504-1|AAH00504.1|  333|Homo sapiens SUCLG1 protein protein.
          Length = 333

 Score = 79.4 bits (187), Expect = 1e-14
 Identities = 37/80 (46%), Positives = 55/80 (68%)
 Frame = -3

Query: 641 SEYLTQYNTGQKAKPVVSFIAGLTAPPGRRMXXXXXXXXXXXXXAMDKIKALEKANVIVT 462
           +E+L Q+N+G  +KPVVSFIAGLTAPPGRRM             A +KI AL+ A V+V+
Sbjct: 254 AEFLKQHNSGPNSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVS 313

Query: 461 RSPAKMGVELHKEMKRLEII 402
            SPA++G  ++KE ++ +++
Sbjct: 314 MSPAQLGTTIYKEFEKRKML 333


>AF104921-1|AAD17940.2|  333|Homo sapiens succinyl-CoA synthetase
           alpha subunit protein.
          Length = 333

 Score = 79.4 bits (187), Expect = 1e-14
 Identities = 37/80 (46%), Positives = 55/80 (68%)
 Frame = -3

Query: 641 SEYLTQYNTGQKAKPVVSFIAGLTAPPGRRMXXXXXXXXXXXXXAMDKIKALEKANVIVT 462
           +E+L Q+N+G  +KPVVSFIAGLTAPPGRRM             A +KI AL+ A V+V+
Sbjct: 254 AEFLKQHNSGPNSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVS 313

Query: 461 RSPAKMGVELHKEMKRLEII 402
            SPA++G  ++KE ++ +++
Sbjct: 314 MSPAQLGTTIYKEFEKRKML 333


>AC096770-1|AAY24107.1|  333|Homo sapiens unknown protein.
          Length = 333

 Score = 79.4 bits (187), Expect = 1e-14
 Identities = 37/80 (46%), Positives = 55/80 (68%)
 Frame = -3

Query: 641 SEYLTQYNTGQKAKPVVSFIAGLTAPPGRRMXXXXXXXXXXXXXAMDKIKALEKANVIVT 462
           +E+L Q+N+G  +KPVVSFIAGLTAPPGRRM             A +KI AL+ A V+V+
Sbjct: 254 AEFLKQHNSGPNSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVS 313

Query: 461 RSPAKMGVELHKEMKRLEII 402
            SPA++G  ++KE ++ +++
Sbjct: 314 MSPAQLGTTIYKEFEKRKML 333


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,862,472
Number of Sequences: 237096
Number of extensions: 1667354
Number of successful extensions: 3159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3159
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)