Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10i07
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha...    25   8.1  
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces...    25   8.1  

>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
 Frame = -2

Query: 341 VLDTIGNNFLLRET-ISKLKRQ*STSSAILNI*LC*ARLKCYFILAT*FTRY--YL*QRQ 171
           V+D + +   +R + +  ++   STS+ ++    C + L+   +L T  TR   Y+  +Q
Sbjct: 180 VVDLVESGETMRASGLKPIETVMSTSAVLVRSSNCSSELEP--LLQTIITRIRGYIIAQQ 237

Query: 170 YVLINLYVSQPHFFIV 123
           YVL+N  V++ H  +V
Sbjct: 238 YVLVNYNVNREHLPVV 253


>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = -3

Query: 223 AISF*QLNSLDIIYSKDSMF*STYT*VSRIFLLLKIVYIA*FISDISTKTSFIILSYRK* 44
           AI    L  LD++++K      + + +    L   I Y+A  I   S K  FI+    + 
Sbjct: 2   AIKVELLGGLDLLFNKQKALSLSLSNLGSTKLGSLIDYMAQIIEKPSQKDLFILNGTVRP 61

Query: 43  AILLFMSHSSWQIL 2
            I++ ++   W++L
Sbjct: 62  GIIVLVNDQDWELL 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,449
Number of Sequences: 5004
Number of extensions: 59600
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)