Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10i01
         (254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   1.2  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    25   1.2  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    25   1.6  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   2.8  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    24   3.7  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    23   4.9  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    23   6.4  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    23   8.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    23   8.5  

>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 170 KCVEFIYGGCQANANNFETIE-ECEAACLYN 81
           + + +++GGC    ++ ETIE E E  CL+N
Sbjct: 253 RTLAYVFGGCM---HSLETIEGEEEGECLFN 280


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 254 ANPDCLLPIKTGP 216
           ANPDCLLP+   P
Sbjct: 84  ANPDCLLPLNKQP 96


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 35  YGNVGLWWWNL 3
           +G +GLWWW L
Sbjct: 194 FGLLGLWWWML 204


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 73   SHVLYR--QAASHSSIVSKLLAFAWQPP*MNSTHLSSDES*AYLRK 204
            SH+L      ASH+++   +L +      +  THL S+ES + LR+
Sbjct: 1124 SHILTALLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLRE 1169


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 90  AGCFALFYSLKIISIRLATSVDEFN 164
           A CF+    LK++ +RL   V E N
Sbjct: 63  AKCFSTLLGLKLLCVRLDNFVQEAN 87


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
 Frame = -1

Query: 203  FRRYAYDSSEDKCVEFIYG------GCQANANNFETIEECEAACLYNTCECSC 63
            F+RY    ++D+C   +         C A + +  +++  +     NT EC C
Sbjct: 1233 FQRYESTLTDDQCFINVSPLLLKCPSCNATSFSLRSVKSLKETLYANTVECDC 1285


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 205 VSEDMPTIHRRTNALNSSTEVAKRML 128
           V+  + ++H+   ALN S+ V K +L
Sbjct: 497 VNSPLSSVHQLREALNHSSSVTKEVL 522


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 164 VEFIYGGCQANANNFETI 111
           + FI+GGC +NA   E +
Sbjct: 6   LSFIFGGCCSNAYALEAL 23


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 96   CFALFYSLKIISIRLATSVDEFNAFVLR*IVGISSETAPARARLYWQQT 242
            CF ++  + +ISI     VDE    + R    I S   P  +R Y +++
Sbjct: 1041 CFVIYLKVILISISRLRQVDENTNSIKR----IVSRLQPLHSRQYTRES 1085


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,054,280
Number of Sequences: 5004
Number of extensions: 18202
Number of successful extensions: 52
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)