Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10h23
(561 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC103741-1|AAI03742.1| 144|Homo sapiens cornichon homolog (Dros... 163 5e-40
AY358635-1|AAQ88998.1| 144|Homo sapiens CNIL protein. 163 5e-40
AF104398-1|AAC98388.1| 144|Homo sapiens cornichon protein. 163 5e-40
AF031379-1|AAD32301.1| 134|Homo sapiens cornichon-like protein ... 147 2e-35
BC047953-1|AAH47953.1| 160|Homo sapiens cornichon homolog 2 (Dr... 108 1e-23
BC022780-1|AAH22780.1| 160|Homo sapiens cornichon homolog 3 (Dr... 105 1e-22
AL596330-1|CAH73437.1| 160|Homo sapiens cornichon homolog 3 (Dr... 105 1e-22
AK096312-1|BAC04760.1| 160|Homo sapiens protein ( Homo sapiens ... 105 1e-22
BC000573-1|AAH00573.1| 139|Homo sapiens cornichon homolog 4 (Dr... 62 2e-09
AK222634-1|BAD96354.1| 139|Homo sapiens HSPC163 protein variant... 61 3e-09
>BC103741-1|AAI03742.1| 144|Homo sapiens cornichon homolog
(Drosophila) protein.
Length = 144
Score = 163 bits (395), Expect = 5e-40
Identities = 76/144 (52%), Positives = 96/144 (66%)
Frame = -3
Query: 538 MAFSFPAFAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXX 359
MAF+F AF Y++AL+ A LIFF+I+H+IAFDELKTDYKNPIDQCN+
Sbjct: 1 MAFTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHA 60
Query: 358 XXXXXXXLSGEWFSLLINIPLILYHIHRYYTRPVMSGPGLYDPTSIMNADVLTSCQREGW 179
+ EW +L +N+PL+ YHI RY +RPVMSGPGLYDPT+IMNAD+L CQ+EGW
Sbjct: 61 FFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGW 120
Query: 178 IKXXXXXXXXXXXXYGMIVVLIAA 107
K YGMI VL+++
Sbjct: 121 CKLAFYLLAFFYYLYGMIYVLVSS 144
>AY358635-1|AAQ88998.1| 144|Homo sapiens CNIL protein.
Length = 144
Score = 163 bits (395), Expect = 5e-40
Identities = 76/144 (52%), Positives = 96/144 (66%)
Frame = -3
Query: 538 MAFSFPAFAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXX 359
MAF+F AF Y++AL+ A LIFF+I+H+IAFDELKTDYKNPIDQCN+
Sbjct: 1 MAFTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHA 60
Query: 358 XXXXXXXLSGEWFSLLINIPLILYHIHRYYTRPVMSGPGLYDPTSIMNADVLTSCQREGW 179
+ EW +L +N+PL+ YHI RY +RPVMSGPGLYDPT+IMNAD+L CQ+EGW
Sbjct: 61 FFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGW 120
Query: 178 IKXXXXXXXXXXXXYGMIVVLIAA 107
K YGMI VL+++
Sbjct: 121 CKLAFYLLAFFYYLYGMIYVLVSS 144
>AF104398-1|AAC98388.1| 144|Homo sapiens cornichon protein.
Length = 144
Score = 163 bits (395), Expect = 5e-40
Identities = 76/144 (52%), Positives = 96/144 (66%)
Frame = -3
Query: 538 MAFSFPAFAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXX 359
MAF+F AF Y++AL+ A LIFF+I+H+IAFDELKTDYKNPIDQCN+
Sbjct: 1 MAFTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHA 60
Query: 358 XXXXXXXLSGEWFSLLINIPLILYHIHRYYTRPVMSGPGLYDPTSIMNADVLTSCQREGW 179
+ EW +L +N+PL+ YHI RY +RPVMSGPGLYDPT+IMNAD+L CQ+EGW
Sbjct: 61 FFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGW 120
Query: 178 IKXXXXXXXXXXXXYGMIVVLIAA 107
K YGMI VL+++
Sbjct: 121 CKLAFYLLAFFYYLYGMIYVLVSS 144
>AF031379-1|AAD32301.1| 134|Homo sapiens cornichon-like protein
protein.
Length = 134
Score = 147 bits (357), Expect = 2e-35
Identities = 69/134 (51%), Positives = 88/134 (65%)
Frame = -3
Query: 508 IVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXXXXXXXXXLSG 329
++AL+ A LIFF+I+H+IAFDELKTDYKNPIDQCN+ +
Sbjct: 1 MLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAA 60
Query: 328 EWFSLLINIPLILYHIHRYYTRPVMSGPGLYDPTSIMNADVLTSCQREGWIKXXXXXXXX 149
EW +L +N+PL+ YHI RY +RPVMSGPGLYDPT+IMNAD+L CQ+EGW K
Sbjct: 61 EWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAF 120
Query: 148 XXXXYGMIVVLIAA 107
YGMI VL+++
Sbjct: 121 FYYLYGMIYVLVSS 134
>BC047953-1|AAH47953.1| 160|Homo sapiens cornichon homolog 2
(Drosophila) protein.
Length = 160
Score = 108 bits (260), Expect = 1e-23
Identities = 60/159 (37%), Positives = 80/159 (50%), Gaps = 16/159 (10%)
Frame = -3
Query: 538 MAFSFPAFAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQ---------------- 407
MAF+F AF Y++ L+ A LIFF I+H+IAFDEL+TD+KNPIDQ
Sbjct: 1 MAFTFAAFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERI 60
Query: 406 CNSXXXXXXXXXXXXXXXXXXXXLSGEWFSLLINIPLILYHIHRYYTRPVMSGPGLYDPT 227
C + EW +L +NIPL+ YH+ RY+ RP +YD
Sbjct: 61 CCLLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAV 120
Query: 226 SIMNADVLTSCQREGWIKXXXXXXXXXXXXYGMIVVLIA 110
SIMNAD+L CQ+E W K Y M+ L++
Sbjct: 121 SIMNADILNYCQKESWCKLAFYLLSFFYYLYSMVYTLVS 159
>BC022780-1|AAH22780.1| 160|Homo sapiens cornichon homolog 3
(Drosophila) protein.
Length = 160
Score = 105 bits (251), Expect = 1e-22
Identities = 59/160 (36%), Positives = 82/160 (51%), Gaps = 16/160 (10%)
Frame = -3
Query: 538 MAFSFPAFAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXX 359
MAF+F AF Y+++L+ A LIFF+I+H+IAFDEL+TD+K+PIDQCN
Sbjct: 1 MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERI 60
Query: 358 XXXXXXXLSGE----------------WFSLLINIPLILYHIHRYYTRPVMSGPGLYDPT 227
+ E W +L +N+PL+ YH RY+ P S YDP
Sbjct: 61 CFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPP 120
Query: 226 SIMNADVLTSCQREGWIKXXXXXXXXXXXXYGMIVVLIAA 107
+MNAD L+ CQ+E W K Y MI L+++
Sbjct: 121 VVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS 160
>AL596330-1|CAH73437.1| 160|Homo sapiens cornichon homolog 3
(Drosophila) protein.
Length = 160
Score = 105 bits (251), Expect = 1e-22
Identities = 59/160 (36%), Positives = 82/160 (51%), Gaps = 16/160 (10%)
Frame = -3
Query: 538 MAFSFPAFAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXX 359
MAF+F AF Y+++L+ A LIFF+I+H+IAFDEL+TD+K+PIDQCN
Sbjct: 1 MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERI 60
Query: 358 XXXXXXXLSGE----------------WFSLLINIPLILYHIHRYYTRPVMSGPGLYDPT 227
+ E W +L +N+PL+ YH RY+ P S YDP
Sbjct: 61 CFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPP 120
Query: 226 SIMNADVLTSCQREGWIKXXXXXXXXXXXXYGMIVVLIAA 107
+MNAD L+ CQ+E W K Y MI L+++
Sbjct: 121 VVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS 160
>AK096312-1|BAC04760.1| 160|Homo sapiens protein ( Homo sapiens
cDNA FLJ38993 fis, clone NT2RI2009194, highly similar to
CORNICHON-LIKE PROTEIN. ).
Length = 160
Score = 105 bits (251), Expect = 1e-22
Identities = 59/160 (36%), Positives = 82/160 (51%), Gaps = 16/160 (10%)
Frame = -3
Query: 538 MAFSFPAFAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXX 359
MAF+F AF Y+++L+ A LIFF+I+H+IAFDEL+TD+K+PIDQCN
Sbjct: 1 MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERI 60
Query: 358 XXXXXXXLSGE----------------WFSLLINIPLILYHIHRYYTRPVMSGPGLYDPT 227
+ E W +L +N+PL+ YH RY+ P S YDP
Sbjct: 61 CFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPP 120
Query: 226 SIMNADVLTSCQREGWIKXXXXXXXXXXXXYGMIVVLIAA 107
+MNAD L+ CQ+E W K Y MI L+++
Sbjct: 121 VVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS 160
>BC000573-1|AAH00573.1| 139|Homo sapiens cornichon homolog 4
(Drosophila) protein.
Length = 139
Score = 61.7 bits (143), Expect = 2e-09
Identities = 38/136 (27%), Positives = 59/136 (43%)
Frame = -3
Query: 520 AFAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXXXXXXXX 341
A ++ +L+ LIF S++ +I +L+ DY N C+
Sbjct: 3 AVVFVFSLLDCCALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLL 62
Query: 340 XLSGEWFSLLINIPLILYHIHRYYTRPVMSGPGLYDPTSIMNADVLTSCQREGWIKXXXX 161
+S WF L+N+P+ ++I+RY P G++DPT I N L S +E IK
Sbjct: 63 LMSLHWFIFLLNLPVATWNIYRYIMVP-SGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFH 121
Query: 160 XXXXXXXXYGMIVVLI 113
Y MI+ LI
Sbjct: 122 LLCFFMYLYSMILALI 137
>AK222634-1|BAD96354.1| 139|Homo sapiens HSPC163 protein variant
protein.
Length = 139
Score = 60.9 bits (141), Expect = 3e-09
Identities = 37/136 (27%), Positives = 59/136 (43%)
Frame = -3
Query: 520 AFAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXXXXXXXX 341
A ++ +L+ LIF S++ +I +L+ DY N C+
Sbjct: 3 AVVFVFSLLGCCALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLL 62
Query: 340 XLSGEWFSLLINIPLILYHIHRYYTRPVMSGPGLYDPTSIMNADVLTSCQREGWIKXXXX 161
+S WF L+N+P+ ++I+RY P G++DPT I N L S +E IK
Sbjct: 63 LMSLHWFIFLLNLPVATWNIYRYIMVP-SGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFH 121
Query: 160 XXXXXXXXYGMIVVLI 113
Y MI+ L+
Sbjct: 122 LLCFFMYLYSMILALV 137
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,779,535
Number of Sequences: 237096
Number of extensions: 1415854
Number of successful extensions: 6438
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6432
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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