Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10h21
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.7  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   8.5  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   8.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.5  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 153 LSSDWQVDYESYDWKKLDPSSEETKKL 73
           LSS+W  DY     +K  P S   +KL
Sbjct: 196 LSSEWDSDYTDKSNEKKIPKSSGWRKL 222


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 402 EAKSIPYFWEKFDPENYSIWYAEYKY 325
           + K+   + E   P NYS WY  + Y
Sbjct: 189 DTKTSGKYKEYIIPANYSGWYLNHDY 214


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 402 EAKSIPYFWEKFDPENYSIWYAEYKY 325
           + K+   + E   P NYS WY  + Y
Sbjct: 189 DTKTSGKYKEYIIPANYSGWYLNHDY 214


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 558 HTSYLFCPPSCSVHQLTP 611
           HT+  FC P C  + + P
Sbjct: 39  HTTNAFCLPFCGPNVINP 56


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 558 HTSYLFCPPSCSVHQLTP 611
           HT+  FC P C  + + P
Sbjct: 38  HTTNAFCLPFCGPNVINP 55


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 144 QTTAGTRAPFRATPTLQRWWNCCLHQTGRRMRK 242
           + +AGT A F  + T+    NC    + RR  K
Sbjct: 624 RVSAGTPAAFNISTTIYENQNCLDASSSRRGSK 656


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,536
Number of Sequences: 438
Number of extensions: 3777
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)