Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10h19
         (595 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.            31   4.1  
X74955-1|CAA52910.1|  622|Homo sapiens mucin protein.                  31   4.1  
AF253321-1|AAF64523.1|  716|Homo sapiens cervical mucin MUC5B pr...    31   4.1  
X74370-1|CAA52408.1|  543|Homo sapiens mucin protein.                  30   7.1  

>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
          Length = 3570

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -2

Query: 408  SVTPKTKPARK---SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAP 238
            S TP T P  K   SP + P    T+   + S  P+T +T   +T      T +S    P
Sbjct: 2887 SSTPGTAPPPKVLTSPATTPTA--TSSKATSSSSPRTATTLPVLTSTATKSTATSVTPIP 2944

Query: 237  LTPSNTTGTL 208
             +   TTGTL
Sbjct: 2945 SSTLGTTGTL 2954


>X74955-1|CAA52910.1|  622|Homo sapiens mucin protein.
          Length = 622

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -2

Query: 408 SVTPKTKPARK---SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAP 238
           S TP T P  K   SP + P    T+   + S  P+T +T   +T      T +S    P
Sbjct: 101 SSTPGTAPPPKVLTSPATTPTA--TSSKATSSSSPRTATTLPVLTTTATKSTATSVTPIP 158

Query: 237 LTPSNTTGTL 208
            +   TTGTL
Sbjct: 159 SSTLGTTGTL 168


>AF253321-1|AAF64523.1|  716|Homo sapiens cervical mucin MUC5B
           protein.
          Length = 716

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -2

Query: 408 SVTPKTKPARK---SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAP 238
           S TP T P  K   SP + P    T+   + S  P+T +T   +T      T +S    P
Sbjct: 361 SSTPGTAPPPKVLTSPATTPTA--TSSKATSSSSPRTATTLPVLTSTATKSTATSVTPIP 418

Query: 237 LTPSNTTGTL 208
            +   TTGTL
Sbjct: 419 SSTLGTTGTL 428


>X74370-1|CAA52408.1|  543|Homo sapiens mucin protein.
          Length = 543

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = -2

Query: 402 TPKTKPARK---SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLT 232
           TP T P  K   SP + P    T+   + S  P+T +T   +T      T +S    P +
Sbjct: 54  TPGTAPPPKVLTSPATTPTA--TSSKATSSSSPRTATTLPVLTSTATKSTATSVTPIPSS 111

Query: 231 PSNTTGTL 208
              TTGTL
Sbjct: 112 TLGTTGTL 119


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,676,688
Number of Sequences: 237096
Number of extensions: 1993061
Number of successful extensions: 9715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9715
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)