Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10g17
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   1.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   1.7  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   6.8  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   6.8  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   6.8  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   6.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   6.8  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    20   9.0  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 321 LPMLFEIMSNLFFN 362
           LP ++E+M +L+FN
Sbjct: 157 LPPMYEVMPHLYFN 170


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 321 LPMLFEIMSNLFFN 362
           LP ++E+M +L+FN
Sbjct: 157 LPPMYEVMPHLYFN 170


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 361 LKNKLLIISNNIGKHLQYMSI 299
           L NK +  +NN  K LQY +I
Sbjct: 85  LSNKTIHNNNNNYKKLQYYNI 105


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 361 LKNKLLIISNNIGKHLQYMSI 299
           L NK +  +NN  K LQY +I
Sbjct: 85  LSNKTIHNNNNNYKKLQYYNI 105


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 361 LKNKLLIISNNIGKHLQYMSI 299
           L NK +  +NN  K LQY +I
Sbjct: 85  LSNKTIHNNNNNYKKLQYYNI 105


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 361 LKNKLLIISNNIGKHLQYMSI 299
           L NK +  +NN  K LQY +I
Sbjct: 85  LSNKTIHNNNNNYKKLQYYNI 105


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 361 LKNKLLIISNNIGKHLQYMSI 299
           L NK +  +NN  K LQY +I
Sbjct: 318 LSNKTIHNNNNNYKKLQYYNI 338


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 226 MFKGLIIFGAGVYTG 182
           +FKG +  GAG+  G
Sbjct: 87  LFKGFVHLGAGLAVG 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,092
Number of Sequences: 438
Number of extensions: 1372
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)