Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10g07
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   3.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.4  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 25  RVI*ITNNSQQKYRTDCRNINCDF*YNNITY 117
           R I   NN +  Y  +  N NC   Y NI Y
Sbjct: 88  RTIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 43  NNSQQKYRTDCRNINCDF*YNNITY 117
           NN +  Y  +  N NC   Y NI Y
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 43  NNSQQKYRTDCRNINCDF*YNNITY 117
           NN +  Y  +  N NC   Y NI Y
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 43  NNSQQKYRTDCRNINCDF*YNNITY 117
           NN +  Y  +  N NC   Y NI Y
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 92  TSNIIISPTNFVLDFFC 142
           T  +II+  NF+L  FC
Sbjct: 272 TERMIIANLNFILHLFC 288


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 5   VISTKKNV*FKLQTILNKNIGRIAGI*IVTSNIIISPTNFVLDFFCNIFRT 157
           VI    N  ++  TIL  N        ++ +N+I+S T  V+     IFR+
Sbjct: 79  VIRVPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRS 129


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 590 QLGWMCHHTRECTKIALN*VLTCSEIIL*SVYKL*KKMLSRYLNYFY 450
           QL  + ++T +CT++      TC E++      + K+ L  YL + Y
Sbjct: 211 QLQLVKNYTADCTQVYSTGNFTCLEVVF-----VLKRRLGYYLFHTY 252


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 254 YDRFFTQQNRYNNFYGLHY 198
           Y+ +    N YNN+  L+Y
Sbjct: 101 YNNYNYNNNNYNNYKKLYY 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,930
Number of Sequences: 438
Number of extensions: 4450
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)