Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10g05
         (356 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.15 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   0.82 
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               23   1.4  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.15
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -3

Query: 183 FFNQPKYFEE-WVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLE 43
           F N  K+ ++ +V N+K +      +HD   ++ LI D+RKKQ++SLE
Sbjct: 340 FINILKFLKQKYVKNSKLE---KVIKHD--ILRMLIIDLRKKQLKSLE 382


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 140 VFVTHSSKYFGWLKKKNNPTGNDVYIAILPTSSFQL 247
           VF+  +  +  W K  +NP G D   +++P  ++QL
Sbjct: 78  VFLGLNLGFLAWAK--HNPRGKDALWSLVPHMAWQL 111


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 278 SELRLLYLDFSLINILSQFIT 340
           S LR +YL  S+I I S F+T
Sbjct: 3   SMLRCIYLFLSVILITSYFVT 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,572
Number of Sequences: 438
Number of extensions: 2514
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)