Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10f21
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 31 0.69
Z69664-5|CAE17882.2| 360|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 30 1.6
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 29 2.8
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 29 2.8
Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical pr... 29 3.7
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 29 3.7
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 3.7
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical ... 28 4.9
Z99288-1|CAB16545.2| 339|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical pr... 27 8.5
AF106573-5|AAF02104.2| 358|Caenorhabditis elegans Seven tm rece... 27 8.5
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T ++ T+ P + TTT T PT T++ T+ AP + T TTT
Sbjct: 148 TETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTT 207
Query: 554 AGAAT 568
T
Sbjct: 208 TTPTT 212
Score = 31.5 bits (68), Expect = 0.52
Identities = 17/65 (26%), Positives = 25/65 (38%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T ++ T+ P + TTT T PT T++ T+ P + T TTT
Sbjct: 169 TTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTT 228
Query: 554 AGAAT 568
T
Sbjct: 229 TTTTT 233
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/65 (26%), Positives = 24/65 (36%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T + T+ E + TTT T PT T++ T+ P + T TTT
Sbjct: 134 TTTTETTTTPTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTT 193
Query: 554 AGAAT 568
T
Sbjct: 194 TAPTT 198
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/65 (26%), Positives = 25/65 (38%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T ++ T+ P + TTT T PT T++ T+ P + T TTT
Sbjct: 155 TTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTT 214
Query: 554 AGAAT 568
T
Sbjct: 215 TVPTT 219
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/65 (24%), Positives = 23/65 (35%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T ++ T P + TTT T PT T++ T+ P + TTT
Sbjct: 141 TTPTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTT 200
Query: 554 AGAAT 568
T
Sbjct: 201 TTPTT 205
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/65 (24%), Positives = 24/65 (36%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T ++ T+ P + TTT T PT T++ T+ P + TTT
Sbjct: 162 TTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTT 221
Query: 554 AGAAT 568
T
Sbjct: 222 TTPTT 226
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 31.1 bits (67), Expect = 0.69
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +2
Query: 368 ELTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFT 547
E+T + +T+ + + TTT T PT T+S TS + TS T
Sbjct: 51 EVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTS-TTSTTTTTTPTTTTSTT 109
Query: 548 TTAGAAT 568
TT T
Sbjct: 110 TTTTTTT 116
>Z69664-5|CAE17882.2| 360|Caenorhabditis elegans Hypothetical
protein K04D7.6 protein.
Length = 360
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 368 ELTNASSLITSVALAP--VEDSIGSFTTTAGAATIVLEPTDTSS 493
E T LI AL P E SI TTTA A IV EPT +SS
Sbjct: 258 EATPVFILIAFGALMPDLKEWSISKTTTTAEATIIVTEPTSSSS 301
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +2
Query: 443 TTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAAT 568
TT+ A+T EP+ TS++ TS + +PV ++TS ++++ T
Sbjct: 433 TTSTASTSTTEPS-TSTVTTSPSTSPVTSTVTSSSSSSTTVT 473
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +2
Query: 371 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTT 550
+ + S+ T+ V ++ S TT + + V TS+ S + +E + T+FT+
Sbjct: 271 IESTSTSTTTPTTTTVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTT-IESTSTTFTS 329
Query: 551 TAGAAT 568
TA +T
Sbjct: 330 TASTST 335
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +2
Query: 443 TTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAAT 568
TT+ A+T EP+ TS++ TS + +PV ++TS ++++ T
Sbjct: 433 TTSTASTSTTEPS-TSTVTTSPSTSPVTSTVTSSSSSSTTVT 473
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +2
Query: 371 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTT 550
+ + S+ T+ V ++ S TT + + V TS+ S + +E + T+FT+
Sbjct: 271 IESTSTSTTTPTTTTVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTT-IESTSTTFTS 329
Query: 551 TAGAAT 568
TA +T
Sbjct: 330 TASTST 335
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSI--GSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFT 547
T ASS +TS A ++ + TTT A+T + TS+ +TS + P +T+
Sbjct: 225 TEASSTVTSTTTARTTTTMIPTTPTTTTIASTSTVTSIVTSTTVTSTTV-PTTTVVTTVP 283
Query: 548 TTAGAAT 568
TT +T
Sbjct: 284 TTTATST 290
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSI--GSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFT 547
T ASS +TS A ++ + TTT A+T + TS+ +TS + P +T+
Sbjct: 207 TEASSTVTSTTTARTTTTMIPTTPTTTTIASTSTVTSIVTSTTVTSTTV-PTTTVVTTVP 265
Query: 548 TTAGAAT 568
TT +T
Sbjct: 266 TTTATST 272
>Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical
protein F33E2.7 protein.
Length = 174
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 440 TTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIXLEXHR 589
TTT T PT T++ T+ P + T TTT +T E R
Sbjct: 97 TTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTRSTPLTEVFR 146
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 534 IESSTGASATEVINDEVSVGSKTIVAAPAVV-VNDPIESSTGASATEV 394
I STG++AT V SVGS T A+P+ + TG++ T V
Sbjct: 268 ISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTVSGPTGSTVTVV 315
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 534 IESSTGASATEVINDEVSVGSKTIVAAPAVV-VNDPIESSTGASATEV 394
I STG++AT V SVGS T A+P+ + TG++ T V
Sbjct: 475 ISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTVSGPTGSTVTVV 522
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 534 IESSTGASATEVINDEVSVGSKTIVAAPAVV-VNDPIESSTGASATEV 394
I STG++AT V SVGS T A+P+ + TG++ T V
Sbjct: 475 ISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTVSGPTGSTVTVV 522
>AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical
protein C45H4.13 protein.
Length = 349
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 124 YGFRFNNHNFFCNYFWLNSF*VNCRRSCGYSSFSLWG 234
YG+ +NN+ + NY+ NS+ RSC S+S G
Sbjct: 311 YGYGYNNNYYSGNYYCCNSY-----RSCWRQSYSCSG 342
>Z99288-1|CAB16545.2| 339|Caenorhabditis elegans Hypothetical
protein ZK262.1 protein.
Length = 339
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 94 SCSGFCSDSFYGFRFNNHNFFCNYFWL 174
SC F + S G N N FCN+FW+
Sbjct: 107 SCQ-FLTISIAGIFENRFNTFCNFFWV 132
>Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical
protein F15A4.8b protein.
Length = 808
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +2
Query: 371 LTNASSL---ITSVALAPVEDS-----IGSFTTTAGAATIVLEPTDTSSLITSVALAPVE 526
L NASS +TS AP +S + S TTT + T +E T T+ + S + PV+
Sbjct: 398 LLNASSARPNVTSTTTAPTTESSAIPDVTSTTTTKSSTTPPVESTTTAPVTKSSSTPPVK 457
Query: 527 DS 532
+
Sbjct: 458 ST 459
>AF106573-5|AAF02104.2| 358|Caenorhabditis elegans Seven tm
receptor protein 79 protein.
Length = 358
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 139 NNHNFFCNYFWLNSF*VNCRRSCGYSSFSLWGCYNYSFRYSICENFRTQILWRF 300
N NF C W+ CGYS SL ++FR+ + N + WRF
Sbjct: 85 NRFNFPCLGVWM--LLATNWICCGYSILSLNA--QFAFRWIVMSNSGKNLFWRF 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,151,921
Number of Sequences: 27780
Number of extensions: 192966
Number of successful extensions: 665
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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