Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f19
         (243 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   1.9  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    24   3.2  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    23   5.6  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     23   7.5  
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   7.5  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    23   7.5  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    22   9.9  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    22   9.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    22   9.9  

>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 153 PMLNGLTFSFFAKIENKVTIGKRC 224
           P+L  LTFS   +++N +T+ K C
Sbjct: 585 PLLAKLTFSHEEQVDNVLTLQKYC 608


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1088

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 75   NQTIITIKLQLEQCFS--YN*LLIAYFKPMLNGLTFSFFAKIEN 200
            N TI+T  L+LE C +      +      +++   +S F KIE+
Sbjct: 931  NSTIVTTNLKLETCLNEWERRFVFQGLSELVDSSLYSIFYKIES 974


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +3

Query: 66  YIRN--QTIITIKLQLEQCFS 122
           Y++N   T+IT K QLE  FS
Sbjct: 385 YVKNLDDTVITCKSQLEDLFS 405


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 159 LNGLTFSFFAKIENKVTIGKRCEVNSS 239
           + G+ +++FA  + +    K CEVN +
Sbjct: 73  VKGINYAYFAAYKEENNEEKLCEVNGN 99


>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 2   NAISDGILCRTYPFST 49
           NA++DG +C  Y +S+
Sbjct: 69  NALTDGAVCTVYVYSS 84


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +2

Query: 59  HNVHKKSNYNNNKTT 103
           H++HKK+N +++ TT
Sbjct: 18  HSLHKKANNSSSSTT 32


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 112 CSNCSFIVIIV*FLMYV 62
           CS CS    ++ FL+YV
Sbjct: 206 CSTCSISAALLLFLLYV 222


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 112 CSNCSFIVIIV*FLMYV 62
           CS CS    ++ FL+YV
Sbjct: 184 CSTCSISAALLLFLLYV 200


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 104 IRAMF*L*LAFDRIFQAHVEWPDVFFLREN 193
           +R  F   ++F RI +AH+E    + ++EN
Sbjct: 723 VRIRFRKLMSFTRILKAHLENSCEYVIKEN 752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 927,201
Number of Sequences: 5004
Number of extensions: 13194
Number of successful extensions: 32
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)