Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f19
         (243 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical pr...    29   0.44 
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    26   3.1  
U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine rec...    26   4.1  
AL132841-6|CAB60331.2|  494|Caenorhabditis elegans Hypothetical ...    25   7.1  
AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical ...    25   7.1  
Z81055-11|CAB02899.2|  384|Caenorhabditis elegans Hypothetical p...    25   9.4  
Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AL022716-6|CAA18774.2|  384|Caenorhabditis elegans Hypothetical ...    25   9.4  
AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical ...    25   9.4  

>U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical
           protein F19C7.3 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 41  FSTIKLHNVHKKS--NYNNNKTTIRAMF*L*LAFDRIFQA-HVE 163
           ++T KL N+HKKS  N+NN+K  +  +      FD +F   HV+
Sbjct: 71  YNTTKLDNIHKKSIFNFNNSKKCLTLL----TRFDDLFSIDHVD 110


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 8   ISDGILCRTYPFSTIKLHNVHKKSNYNNNKTTIRA 112
           +S  I+    P + + LHN+H    Y NN T +++
Sbjct: 318 LSKNIITEIQPKAFLGLHNLHTLVLYGNNITDLKS 352


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 8   ISDGILCRTYPFSTIKLHNVHKKSNYNNNKTTIRA 112
           +S  I+    P + + LHN+H    Y NN T +++
Sbjct: 318 LSKNIITEIQPKAFLGLHNLHTLVLYGNNITDLKS 352


>U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine
           receptor, class w protein71 protein.
          Length = 353

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 11  SDGILCRTYPFSTIKL-HNVHKKSNYNN 91
           SD ++  TYP  TI L H + K SN++N
Sbjct: 217 SDILVAITYPILTILLFHELVKSSNFSN 244


>AL132841-6|CAB60331.2|  494|Caenorhabditis elegans Hypothetical
           protein Y15E3A.3 protein.
          Length = 494

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 41  FSTIKLHNVHKKSNYNNN 94
           FSTI  H + KKSN+  N
Sbjct: 346 FSTILAHEITKKSNFMTN 363


>AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.2 protein.
          Length = 1061

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 29  RTYPFSTIKLHNVHKKSNYNNNKTTIRA 112
           RT+ FST+K     ++S+ N  +T +R+
Sbjct: 28  RTHLFSTVKQEKQRRESHDNKYETAVRS 55


>Z81055-11|CAB02899.2|  384|Caenorhabditis elegans Hypothetical
           protein C24F3.3 protein.
          Length = 384

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +2

Query: 134 FDRIFQAHVEWPDVF 178
           FD++  +HVE+PD++
Sbjct: 200 FDKLKTSHVEYPDIY 214


>Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical
           protein R03D7.1 protein.
          Length = 1249

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 150 KPMLNGLTFSFFAKIENKVTIGKRCEVNSS 239
           K +L+GL  S      N V IG+RC V  S
Sbjct: 343 KMLLSGLEPSIVGPETNFVNIGERCNVAGS 372


>AL022716-6|CAA18774.2|  384|Caenorhabditis elegans Hypothetical
           protein C24F3.3 protein.
          Length = 384

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +2

Query: 134 FDRIFQAHVEWPDVF 178
           FD++  +HVE+PD++
Sbjct: 200 FDKLKTSHVEYPDIY 214


>AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical
           protein F56H1.3 protein.
          Length = 1174

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 161 EWPDVFFLRENRK*GNYWKAV 223
           E PDV+F++E +K G Y  A+
Sbjct: 468 EKPDVYFMKELKKFGQYSTAL 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,982,983
Number of Sequences: 27780
Number of extensions: 72216
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)