Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f18
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    29   0.46 
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    27   1.8  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   2.4  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   2.4  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    27   3.2  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    26   4.3  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   5.6  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   7.5  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   9.9  

>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -1

Query: 307 ATYLKRTFYKRIRRIYGGCSGIKTA*ELASKLDALLGVLLPKNRTDSLHLTN--HFFSVQ 134
           AT + +   K   R      G      L +KL  L+  +LPK R   +HLT+  HF S  
Sbjct: 188 ATSMSKAPAKTESRGSNSFEGTSRLANLGAKLLCLIWAMLPKGRFFVVHLTDAFHFLSKL 247

Query: 133 TYLFTKLLA 107
              F+KL A
Sbjct: 248 DERFSKLNA 256


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 22/95 (23%), Positives = 43/95 (45%)
 Frame = +1

Query: 154 SLSEENQSYFWEEVLLTMHRAYWLILMLFLSLNSRHKFALFFCRMFVLDTLPLFWAVAIR 333
           S++E  +S F  ++L     A   IL + L       F + +   F L  +     + + 
Sbjct: 110 SVAEVAKSQFPHDLLGAYLSALLSILSVSLLGILDDLFDIRWRHKFFLPAIAAIPLLVVY 169

Query: 334 YLNFQITLHSITIVVKPRLSRSFFITDTGVFFFIA 438
           Y+++ +T  S+  +V+P L RS        +F++A
Sbjct: 170 YVDYGVTYVSVPSIVRPFLKRSLINLGFLYYFYMA 204


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 227 FLCCFYP*TAAINSPYSF 280
           F CC +P TA+ +SP+S+
Sbjct: 439 FWCCSFPSTASTSSPFSY 456


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 247 LNSRHKFALFFCRMFVLDTLPLFWAVAIRYLN 342
           LN+  KFA+ F R + L       AV +RYL+
Sbjct: 493 LNNNDKFAIAFVRKYTLSRFSDCHAVLLRYLD 524


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 14  TQINQCQCSNLLTYIYFFN*YFDCLQ 91
           +Q+ Q QC+ L TYI F   YF  L+
Sbjct: 243 SQLLQAQCTALSTYISFLTFYFALLK 268


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 202 LGVLLPKNRTDSLHLTNHF 146
           LG  L KNR D L L+ HF
Sbjct: 151 LGAFLKKNRVDGLSLSMHF 169


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 555 YTEILERISRG-GWRIYVVDVY 493
           Y   LER +RG GWR+YV+  Y
Sbjct: 309 YEYQLERETRGYGWRLYVLQEY 330


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 629 YHHPAYFRREAVMRFGS 579
           Y HP  FR  AV+ FGS
Sbjct: 249 YFHPHRFRSRAVLEFGS 265


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 449 PSI*AIKKKTPVSVIKKDLLSLGLTTIVIECR 354
           P I   +K  P     +DL SLG+T  +I CR
Sbjct: 184 PVINGEQKTKPTQQAIRDLRSLGITPDLIACR 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,634
Number of Sequences: 5004
Number of extensions: 52960
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)