Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f18
         (670 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061251-1|AAL28799.1|  211|Drosophila melanogaster LD18757p pro...    30   2.5  
AE014297-3387|AAF56185.1|  211|Drosophila melanogaster CG10214-P...    30   2.5  
BT004507-1|AAO42671.1| 1038|Drosophila melanogaster AT31021p pro...    29   7.6  
AY051916-1|AAK93340.1|  968|Drosophila melanogaster LD40339p pro...    29   7.6  
AE014296-1003|AAN12111.1|  968|Drosophila melanogaster CG5505-PB...    29   7.6  
AE014296-1002|AAN12110.1| 1015|Drosophila melanogaster CG5505-PE...    29   7.6  
AE014296-1001|AAN12109.1|  948|Drosophila melanogaster CG5505-PC...    29   7.6  
AE014296-1000|AAN12108.1|  995|Drosophila melanogaster CG5505-PF...    29   7.6  
AE014296-999|AAN12107.1| 1038|Drosophila melanogaster CG5505-PD,...    29   7.6  
AE014296-998|AAF50748.2| 1085|Drosophila melanogaster CG5505-PA,...    29   7.6  
EF120979-1|ABO93157.1| 1396|Drosophila melanogaster misfire prot...    28   10.0 
EF120976-1|ABO93154.1| 1437|Drosophila melanogaster misfire prot...    28   10.0 
EF120975-1|ABO93153.1| 1659|Drosophila melanogaster misfire prot...    28   10.0 
AF247761-1|AAF74192.1| 1671|Drosophila melanogaster kinesin supe...    28   10.0 
AE014296-1535|AAF50355.1| 1782|Drosophila melanogaster CG5747-PA...    28   10.0 
AE013599-2336|AAM70884.1| 1670|Drosophila melanogaster CG8566-PD...    28   10.0 

>AY061251-1|AAL28799.1|  211|Drosophila melanogaster LD18757p
           protein.
          Length = 211

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 423 NTCICDKKRSAKPRFDYDSNRVQSYLEI*IPNRYCP 316
           N+ + D+ +S+    +  SN V SYLE  IP R CP
Sbjct: 98  NSGLIDRCKSSDVNLEEASNLVLSYLEKNIPKRACP 133


>AE014297-3387|AAF56185.1|  211|Drosophila melanogaster CG10214-PA
           protein.
          Length = 211

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 423 NTCICDKKRSAKPRFDYDSNRVQSYLEI*IPNRYCP 316
           N+ + D+ +S+    +  SN V SYLE  IP R CP
Sbjct: 98  NSGLIDRCKSSDVNLEEASNLVLSYLEKNIPKRACP 133


>BT004507-1|AAO42671.1| 1038|Drosophila melanogaster AT31021p
           protein.
          Length = 1038

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 474 NTGWAVSSSIHLSNKKKNTCICDK-KRSAKPRFDYDSNRVQSYLEI*IPNRYCPKK 310
           +T  + SSS+H++N K+ T   D+  +S K   D D +  +    I + N + P+K
Sbjct: 713 HTNGSASSSVHVNNSKQKTDAIDEIFKSLKKSADSDEDDDEEEPSIQLTNGWHPQK 768


>AY051916-1|AAK93340.1|  968|Drosophila melanogaster LD40339p
           protein.
          Length = 968

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 474 NTGWAVSSSIHLSNKKKNTCICDK-KRSAKPRFDYDSNRVQSYLEI*IPNRYCPKK 310
           +T  + SSS+H++N K+ T   D+  +S K   D D +  +    I + N + P+K
Sbjct: 643 HTNGSASSSVHVNNSKQKTDAIDEIFKSLKKSADSDEDDDEEEPSIQLTNGWHPQK 698


>AE014296-1003|AAN12111.1|  968|Drosophila melanogaster CG5505-PB,
           isoform B protein.
          Length = 968

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 474 NTGWAVSSSIHLSNKKKNTCICDK-KRSAKPRFDYDSNRVQSYLEI*IPNRYCPKK 310
           +T  + SSS+H++N K+ T   D+  +S K   D D +  +    I + N + P+K
Sbjct: 643 HTNGSASSSVHVNNSKQKTDAIDEIFKSLKKSADSDEDDDEEEPSIQLTNGWHPQK 698


>AE014296-1002|AAN12110.1| 1015|Drosophila melanogaster CG5505-PE,
           isoform E protein.
          Length = 1015

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 474 NTGWAVSSSIHLSNKKKNTCICDK-KRSAKPRFDYDSNRVQSYLEI*IPNRYCPKK 310
           +T  + SSS+H++N K+ T   D+  +S K   D D +  +    I + N + P+K
Sbjct: 643 HTNGSASSSVHVNNSKQKTDAIDEIFKSLKKSADSDEDDDEEEPSIQLTNGWHPQK 698


>AE014296-1001|AAN12109.1|  948|Drosophila melanogaster CG5505-PC,
           isoform C protein.
          Length = 948

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 474 NTGWAVSSSIHLSNKKKNTCICDK-KRSAKPRFDYDSNRVQSYLEI*IPNRYCPKK 310
           +T  + SSS+H++N K+ T   D+  +S K   D D +  +    I + N + P+K
Sbjct: 623 HTNGSASSSVHVNNSKQKTDAIDEIFKSLKKSADSDEDDDEEEPSIQLTNGWHPQK 678


>AE014296-1000|AAN12108.1|  995|Drosophila melanogaster CG5505-PF,
           isoform F protein.
          Length = 995

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 474 NTGWAVSSSIHLSNKKKNTCICDK-KRSAKPRFDYDSNRVQSYLEI*IPNRYCPKK 310
           +T  + SSS+H++N K+ T   D+  +S K   D D +  +    I + N + P+K
Sbjct: 623 HTNGSASSSVHVNNSKQKTDAIDEIFKSLKKSADSDEDDDEEEPSIQLTNGWHPQK 678


>AE014296-999|AAN12107.1| 1038|Drosophila melanogaster CG5505-PD,
           isoform D protein.
          Length = 1038

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 474 NTGWAVSSSIHLSNKKKNTCICDK-KRSAKPRFDYDSNRVQSYLEI*IPNRYCPKK 310
           +T  + SSS+H++N K+ T   D+  +S K   D D +  +    I + N + P+K
Sbjct: 713 HTNGSASSSVHVNNSKQKTDAIDEIFKSLKKSADSDEDDDEEEPSIQLTNGWHPQK 768


>AE014296-998|AAF50748.2| 1085|Drosophila melanogaster CG5505-PA,
           isoform A protein.
          Length = 1085

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 474 NTGWAVSSSIHLSNKKKNTCICDK-KRSAKPRFDYDSNRVQSYLEI*IPNRYCPKK 310
           +T  + SSS+H++N K+ T   D+  +S K   D D +  +    I + N + P+K
Sbjct: 713 HTNGSASSSVHVNNSKQKTDAIDEIFKSLKKSADSDEDDDEEEPSIQLTNGWHPQK 768


>EF120979-1|ABO93157.1| 1396|Drosophila melanogaster misfire
           protein.
          Length = 1396

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 489 AHRHLQRKCATHLEIYVLRSQYSYNGYPTL 578
           AH HLQ KC    E+ +   + ++NG P+L
Sbjct: 50  AHEHLQWKCVAEFELCL--EEIAFNGTPSL 77


>EF120976-1|ABO93154.1| 1437|Drosophila melanogaster misfire
           protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 489 AHRHLQRKCATHLEIYVLRSQYSYNGYPTL 578
           AH HLQ KC    E+ +   + ++NG P+L
Sbjct: 50  AHEHLQWKCVAEFELCL--EEIAFNGTPSL 77


>EF120975-1|ABO93153.1| 1659|Drosophila melanogaster misfire
           protein.
          Length = 1659

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 489 AHRHLQRKCATHLEIYVLRSQYSYNGYPTL 578
           AH HLQ KC    E+ +   + ++NG P+L
Sbjct: 272 AHEHLQWKCVAEFELCL--EEIAFNGTPSL 299


>AF247761-1|AAF74192.1| 1671|Drosophila melanogaster kinesin
            superfamily member DUnc104 protein.
          Length = 1671

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 588  FRFEG-WGSRCNYTEILERISRGGWRIYV 505
            +RFE  W S  + + +L R+S+GG  IY+
Sbjct: 1221 YRFEAAWDSSLHNSALLNRVSQGGETIYI 1249


>AE014296-1535|AAF50355.1| 1782|Drosophila melanogaster CG5747-PA
           protein.
          Length = 1782

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 489 AHRHLQRKCATHLEIYVLRSQYSYNGYPTL 578
           AH HLQ KC    E+ +   + ++NG P+L
Sbjct: 234 AHEHLQWKCVAEFELCL--EEIAFNGTPSL 261


>AE013599-2336|AAM70884.1| 1670|Drosophila melanogaster CG8566-PD
            protein.
          Length = 1670

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 588  FRFEG-WGSRCNYTEILERISRGGWRIYV 505
            +RFE  W S  + + +L R+S+GG  IY+
Sbjct: 1220 YRFEAAWDSSLHNSALLNRVSQGGETIYI 1248


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,761,911
Number of Sequences: 53049
Number of extensions: 555039
Number of successful extensions: 1068
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2889369000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)