Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10f18
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023828-26|CAA19455.2| 431|Caenorhabditis elegans Hypothetical... 32 0.42
AL023828-12|CAA19456.1| 492|Caenorhabditis elegans Hypothetical... 32 0.42
Z68217-9|CAN86607.1| 142|Caenorhabditis elegans Hypothetical pr... 30 1.7
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 28 5.2
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 28 5.2
AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical ... 28 5.2
U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav (... 28 6.9
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (... 28 6.9
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein. 28 6.9
>AL023828-26|CAA19455.2| 431|Caenorhabditis elegans Hypothetical
protein Y17G7B.10a protein.
Length = 431
Score = 31.9 bits (69), Expect = 0.42
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = -1
Query: 361 SAELFGNLNT*SLLPKKVATYLKRTFYKRIRRIYGGCSGIKTA*ELASKLDALLGVLLPK 182
S GN+ S PKKV K T Y+ +R+ GCS + A L K + G LL K
Sbjct: 19 SKRSIGNMEKPSFTPKKVLILSKLTRYEFEKRVNKGCSDEQLA-TLLKKRGSDYGRLLSK 77
Query: 181 NRTDSLHL 158
++ +L
Sbjct: 78 HKIHHSYL 85
>AL023828-12|CAA19456.1| 492|Caenorhabditis elegans Hypothetical
protein Y17G7B.10b protein.
Length = 492
Score = 31.9 bits (69), Expect = 0.42
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = -1
Query: 361 SAELFGNLNT*SLLPKKVATYLKRTFYKRIRRIYGGCSGIKTA*ELASKLDALLGVLLPK 182
S GN+ S PKKV K T Y+ +R+ GCS + A L K + G LL K
Sbjct: 80 SKRSIGNMEKPSFTPKKVLILSKLTRYEFEKRVNKGCSDEQLA-TLLKKRGSDYGRLLSK 138
Query: 181 NRTDSLHL 158
++ +L
Sbjct: 139 HKIHHSYL 146
>Z68217-9|CAN86607.1| 142|Caenorhabditis elegans Hypothetical
protein F58G6.9b protein.
Length = 142
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/49 (20%), Positives = 28/49 (57%)
Frame = +1
Query: 136 EQKKNDSLSEENQSYFWEEVLLTMHRAYWLILMLFLSLNSRHKFALFFC 282
E+ K D + ++++ FW+ ++ +W +L+ ++ +N F+++ C
Sbjct: 72 ERMKIDQENVDSKTNFWKRHIIDSLYHFWQLLLAYILMNVYMVFSVYIC 120
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 130 MSEQKKNDSLSEENQSYFWEEVLLTMH-RAYWLILMLFLSLNSRHKF 267
M K+D + + ++FWEE + H + W++ + + + RH +
Sbjct: 96 MKMLNKDDMIKRADSAFFWEERDIMAHANSEWIVRLQYAFQDPRHLY 142
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 130 MSEQKKNDSLSEENQSYFWEEVLLTMH-RAYWLILMLFLSLNSRHKF 267
M K+D + + ++FWEE + H + W++ + + + RH +
Sbjct: 96 MKMLNKDDMIKRADSAFFWEERDIMAHANSEWIVRLQYAFQDPRHLY 142
>AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical
protein Y39A3A.1 protein.
Length = 311
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 432 KKKNTCICDKKRSAKPRFDYDSN 364
KKKN + DK RS +PR D D +
Sbjct: 23 KKKNYDLDDKPRSGRPRLDIDED 45
>U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform a protein.
Length = 975
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 238 FLSLNSRHKFALFFCRMFVLDTLPLFWAVAIRYLN-FQITLHSITIV--VKPRLSR 396
FL N+ + FA+F F L+ LF A + Y+N FQ L +++ + K LSR
Sbjct: 68 FLCCNNINYFAMFCKTYFNLEDADLFTAEDLYYMNGFQKVLKTLSFLSHTKESLSR 123
>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform b protein.
Length = 1007
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 238 FLSLNSRHKFALFFCRMFVLDTLPLFWAVAIRYLN-FQITLHSITIV--VKPRLSR 396
FL N+ + FA+F F L+ LF A + Y+N FQ L +++ + K LSR
Sbjct: 100 FLCCNNINYFAMFCKTYFNLEDADLFTAEDLYYMNGFQKVLKTLSFLSHTKESLSR 155
>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
Length = 1007
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 238 FLSLNSRHKFALFFCRMFVLDTLPLFWAVAIRYLN-FQITLHSITIV--VKPRLSR 396
FL N+ + FA+F F L+ LF A + Y+N FQ L +++ + K LSR
Sbjct: 100 FLCCNNINYFAMFCKTYFNLEDADLFTAEDLYYMNGFQKVLKTLSFLSHTKESLSR 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,499,088
Number of Sequences: 27780
Number of extensions: 293798
Number of successful extensions: 637
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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