Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f16
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...   272   3e-74
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    28   1.1  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    28   1.5  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   3.5  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   8.0  

>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score =  272 bits (667), Expect = 3e-74
 Identities = 123/177 (69%), Positives = 151/177 (85%)
 Frame = -1

Query: 693 EGALPVYXLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSK 514
           +GA+P Y LDR+ +S+AK+LS+ +KQKRKEKA K+ VP+P+VR  A+ E+FKV+++GKSK
Sbjct: 83  QGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVPLPQVRGVAEEEMFKVIRTGKSK 142

Query: 513 RKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKN 334
           + +WKRM+TK TFVG+ FTR+P K+ERFIRPMALR KKA+VTH EL  T  LPIIGVKKN
Sbjct: 143 KNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQKKANVTHKELGVTMQLPIIGVKKN 202

Query: 333 PSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLL 163
           P S  YT LGV+TKGTVIEVN+SELGLVT  GKVVWGKYAQ+TNNPE DGC+NA+LL
Sbjct: 203 PQSPTYTQLGVLTKGTVIEVNVSELGLVTSGGKVVWGKYAQITNNPELDGCVNALLL 259


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 423 PMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGV 301
           PM   F +    HP  K  FC+P + ++  P       LGV
Sbjct: 287 PMKEEFSQYIKKHPLHKVRFCMPWLSIEDYPQVMACADLGV 327


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = -1

Query: 390 THPELKATFCL-PIIGVKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVV-WGKY 217
           T P ++A FC+ P + +   PS +   +L + +  ++ E+N     +VTQ+       K 
Sbjct: 137 TSPGIRAGFCIFPSLNI---PSGE---NLQIKSSSSLEEINKIPENIVTQSLSYTNLLKK 190

Query: 216 AQVTNNPENDGCINAVLL 163
            + + NP N+GC  ++ L
Sbjct: 191 FETSPNPSNNGCFRSLAL 208


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = -1

Query: 564  AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFI 427
            A  +++  K+L +   K+   KR+V+++T +  N T    + +R++
Sbjct: 883  ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYV 928


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 122 QFHLLNCDNYTFNNEHVYHNTYNLYW 45
           QF  L C +  FN  + ++NT  LY+
Sbjct: 552 QFRALVCHDGVFNTLNTFYNTEELYF 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,058
Number of Sequences: 5004
Number of extensions: 52446
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)