Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f16
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical pr...   311   4e-85
AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical ...   311   4e-85
Z35663-6|CAD82917.1|  606|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z35663-5|CAA84727.1|  681|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine rec...    29   4.3  
U00049-3|AAC47059.1|  339|Caenorhabditis elegans Serpentine rece...    28   5.7  
Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p...    28   7.5  
AY519857-1|AAR89638.1|  444|Caenorhabditis elegans nematode poly...    27   9.9  
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly...    27   9.9  
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly...    27   9.9  
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly...    27   9.9  
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei...    27   9.9  

>Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score =  311 bits (763), Expect = 4e-85
 Identities = 143/182 (78%), Positives = 164/182 (90%)
 Frame = -1

Query: 705 EKVAEGALPVYXLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKS 526
           E+  +GA+P Y LDR  Q+   VLSNMIKQKRK+KAGK++VPIP+VRA +DAE FKV+K+
Sbjct: 78  EQPDKGAVPAYLLDRQQQTSGTVLSNMIKQKRKQKAGKFNVPIPQVRAVSDAEAFKVVKT 137

Query: 525 GKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIG 346
           GK+ RK WKRMVTKVTFVGE+FTRKP KFERFIRPM LRFKKAHVTHPEL+ TF LPI+G
Sbjct: 138 GKTNRKGWKRMVTKVTFVGESFTRKPAKFERFIRPMGLRFKKAHVTHPELQTTFHLPIVG 197

Query: 345 VKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVL 166
           VKKNPSSQMYTSLGVITKGT++EVN+SELG+VTQ GKVVWGK+AQVTNNPENDGCINAVL
Sbjct: 198 VKKNPSSQMYTSLGVITKGTILEVNVSELGMVTQGGKVVWGKFAQVTNNPENDGCINAVL 257

Query: 165 LV 160
           L+
Sbjct: 258 LI 259


>AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score =  311 bits (763), Expect = 4e-85
 Identities = 143/182 (78%), Positives = 164/182 (90%)
 Frame = -1

Query: 705 EKVAEGALPVYXLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKS 526
           E+  +GA+P Y LDR  Q+   VLSNMIKQKRK+KAGK++VPIP+VRA +DAE FKV+K+
Sbjct: 78  EQPDKGAVPAYLLDRQQQTSGTVLSNMIKQKRKQKAGKFNVPIPQVRAVSDAEAFKVVKT 137

Query: 525 GKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIG 346
           GK+ RK WKRMVTKVTFVGE+FTRKP KFERFIRPM LRFKKAHVTHPEL+ TF LPI+G
Sbjct: 138 GKTNRKGWKRMVTKVTFVGESFTRKPAKFERFIRPMGLRFKKAHVTHPELQTTFHLPIVG 197

Query: 345 VKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVL 166
           VKKNPSSQMYTSLGVITKGT++EVN+SELG+VTQ GKVVWGK+AQVTNNPENDGCINAVL
Sbjct: 198 VKKNPSSQMYTSLGVITKGTILEVNVSELGMVTQGGKVVWGKFAQVTNNPENDGCINAVL 257

Query: 165 LV 160
           L+
Sbjct: 258 LI 259


>Z35663-6|CAD82917.1|  606|Caenorhabditis elegans Hypothetical
           protein T04A8.7b protein.
          Length = 606

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
 Frame = -1

Query: 612 RKEKAGKWDVPIP-KVRAQADAEVFKVLKSGKSKRKA-------WKRMVT----KVTFV- 472
           +KE+ GKW + +P K           V+K   S+  A       W   VT    K T + 
Sbjct: 20  KKEEHGKWSITVPAKEDGSCPIPHNSVIKIAVSRHGATHFKLSPWATFVTCPNPKETVIY 79

Query: 471 GENFTRKPPKFE----RFIRPMALRFKKAHV 391
            +NF   P K++    R  RP +LR  +AHV
Sbjct: 80  HQNFWNPPEKYQLKEARPARPASLRIYEAHV 110


>Z35663-5|CAA84727.1|  681|Caenorhabditis elegans Hypothetical
           protein T04A8.7a protein.
          Length = 681

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
 Frame = -1

Query: 612 RKEKAGKWDVPIP-KVRAQADAEVFKVLKSGKSKRKA-------WKRMVT----KVTFV- 472
           +KE+ GKW + +P K           V+K   S+  A       W   VT    K T + 
Sbjct: 95  KKEEHGKWSITVPAKEDGSCPIPHNSVIKIAVSRHGATHFKLSPWATFVTCPNPKETVIY 154

Query: 471 GENFTRKPPKFE----RFIRPMALRFKKAHV 391
            +NF   P K++    R  RP +LR  +AHV
Sbjct: 155 HQNFWNPPEKYQLKEARPARPASLRIYEAHV 185


>U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein136 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +2

Query: 374 FSSGCVTWAFLNLSAIGLMNRSNLGGLRVKFSPTNVTLVTMRFQAFLFDLP 526
           FS  C TW FL+++ I  +   N   L+ K      T     F  FL  LP
Sbjct: 122 FSRRCSTWLFLSIAFIRTLIVRNPMNLKYKQLSNQPTAFYTIFGVFLLSLP 172


>U00049-3|AAC47059.1|  339|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 7 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 113 LLNCDNYTFNNEHVYHNTY--NLYWLQSLWTVCTM 15
           + N + Y  N    Y N Y  + YW+Q LW + T+
Sbjct: 7   IYNLEQYGTNCSEEYSNFYENSKYWIQCLWLIPTL 41


>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical
           protein T08A11.2 protein.
          Length = 1322

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 669 LDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQAD 553
           ++R++  RAK     +  + ++K G+WD   P   A +D
Sbjct: 169 VERELADRAKAGELHVTGQPEKKKGRWDAEAPSTDASSD 207


>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
           protein T08A11.2 protein.
          Length = 1322

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 669 LDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQAD 553
           ++R++  RAK     +  + ++K G+WD   P   A +D
Sbjct: 169 VERELADRAKAGELHVTGQPEKKKGRWDAEAPSTDASSD 207


>AY519857-1|AAR89638.1|  444|Caenorhabditis elegans nematode
           polyprotein allergen related,post-translationnally
           cleaved, the diverse 14.5 kDa cleavageproducts bind
           lipids and retinol (51.7 kD) protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 618 QKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKV 481
           + R++ A K +  +  ++A+   E+ K+ K GKSK    KR+   V
Sbjct: 19  KSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 64


>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
            polyprotein allergen related,post-translationnally
            cleaved, the diverse 14.5 kDa cleavageproducts bind
            lipids and retinol (164.6 kD) protein.
          Length = 1440

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 618  QKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKV 481
            + R++ A K +  +  ++A+   E+ K+ K GKSK    KR+   V
Sbjct: 1015 KSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 1060


>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
           polyprotein allergen relatedprotein 1, isoform c
           protein.
          Length = 1198

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 618 QKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKV 481
           + R++ A K +  +  ++A+   E+ K+ K GKSK    KR+   V
Sbjct: 773 KSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 818


>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
            polyprotein allergen relatedprotein 1, isoform a protein.
          Length = 1440

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 618  QKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKV 481
            + R++ A K +  +  ++A+   E+ K+ K GKSK    KR+   V
Sbjct: 1015 KSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 1060


>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
           protein.
          Length = 1198

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 618 QKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKV 481
           + R++ A K +  +  ++A+   E+ K+ K GKSK    KR+   V
Sbjct: 770 KSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 815


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,988,986
Number of Sequences: 27780
Number of extensions: 289926
Number of successful extensions: 851
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)