Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f13
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.14 
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    28   0.97 
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    26   3.9  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    25   6.9  
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    25   9.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   9.1  

>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 228 NNHCLLKIKIHLHRYFETLMEDLKSYYYT*NRKKDLPLLSQIVDVL 365
           NN C  ++  +L +    L E  K + Y   R K LPLL  ++DVL
Sbjct: 717 NNDCKSQLNAYLMQMRTGLSEKAKDHVYV--RSKTLPLLKCVIDVL 760


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
 Frame = +3

Query: 240 LLKIKIHLHRYFETLMEDLKSYYYT*NRKKDLPLLSQIVDVL*YTNDE-----GANTSIT 404
           LLK+K+     F    +D +S ++  +R++  PL+  I D   Y N E      A+ S++
Sbjct: 417 LLKLKVKNGPAFGLFNQDFESIFHRLSRQQPTPLIGAIAD---YGNPESCIGKAAHKSVS 473

Query: 405 VTNNDLNFRLITRLS 449
             N+D     +  LS
Sbjct: 474 CANDDEVVSAVVSLS 488


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +3

Query: 234 HCL--LKIKIHLHRYFETLMEDL 296
           HCL  + +++HLHR+ E + E+L
Sbjct: 619 HCLSNVSLQLHLHRFHELVSENL 641


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 354 RFGLATVDLFFCSTYNNMILNLPSMFRNIGVNVSLS 247
           + GLA ++    ST N+ ILN+ S  R++    S+S
Sbjct: 430 KIGLAALNSNATSTANHQILNINSALRSVTSGQSVS 465


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 282 LMEDLKSYYYT*NRKKDLPLLSQIVDV 362
           LME + SY     RK D+P L  I DV
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDV 260


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 203  AVRFQSHRQQSLPTKDKDTFTPIFRNIDGRFKIILLY 313
            +++ + +R QSLP  +  T TPI   I G  ++ LLY
Sbjct: 1240 SLQLELNRLQSLPVSNDQTDTPI---ISGSQEVQLLY 1273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,441
Number of Sequences: 5004
Number of extensions: 47796
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)