Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f13
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708     31   1.0  
02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468     30   1.8  
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284...    28   7.1  

>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
          Length = 2033

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +3

Query: 69   SRIVTLPRTLSTAGLDCFTVRLKQDSTLRPAKSLLRF---E*T*HGMLQSVSNLTDNNHC 239
            +R++ + RT+    +DCF  RL+ + +     S LRF   +     +L S S L DN + 
Sbjct: 1007 ARLLIMTRTVVFVAVDCFKNRLEFNPSEEAEHSYLRFADVKRQCRSVLTSASELADNAYR 1066

Query: 240  LLKIKIHL 263
            + ++K  L
Sbjct: 1067 VKRVKREL 1074


>02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468
          Length = 666

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 195 GMLQSVSNLTDNNHCLLKIKIHLHRYFETLMEDLKSYYYT 314
           G++Q+V  LTD   CL  ++   +  +E+L ED+KS+  T
Sbjct: 443 GIIQAVGQLTDVKECLQTLR---NNGWESLFEDVKSFCAT 479


>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
            27829243-27829449,27829611-27829704,27829806-27829870,
            27829946-27830398,27830467-27830760,27830837-27831295,
            27831367-27831588,27831755-27831968,27832039-27832494,
            27833280-27833389,27833468-27833644,27833758-27833979,
            27834048-27834167,27834274-27834383,27834552-27834607,
            27835252-27835440,27835602-27835775,27836066-27836281,
            27837066-27837106,27837971-27837986,27838330-27838415,
            27838737-27838910,27839093-27839149,27839720-27840064,
            27840175-27840216,27840377-27840496,27840575-27840724,
            27840830-27841534,27841609-27841954,27842978-27843080,
            27844817-27844860,27845905-27846101,27846322-27846344,
            27846802-27847122,27847406-27847579,27847843-27848047,
            27848817-27848880,27850097-27850278,27850291-27850350,
            27850688-27850748,27851249-27851313,27851491-27851569,
            27851656-27852021,27852442-27852790,27852887-27852989,
            27853103-27853373,27854296-27854405,27854515-27854652
          Length = 3364

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 92   SWQCNDSTCFWLKLIHRALLAHMKLKLLFP 3
            S  C D+  + LKLI   L   + +KLLFP
Sbjct: 2060 SQPCCDNVLYLLKLIQELLFNQIGIKLLFP 2089


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,507,029
Number of Sequences: 37544
Number of extensions: 260953
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)