Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f13
         (632 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1773|AAF48168.2|  816|Drosophila melanogaster CG2559-PA...    29   6.9  
AE014134-3568|AAN11144.1|  439|Drosophila melanogaster CG31703-P...    29   6.9  
AE014134-1243|AAF52488.1|  402|Drosophila melanogaster CG13783-P...    28   9.1  

>AE014298-1773|AAF48168.2|  816|Drosophila melanogaster CG2559-PA
           protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 279 TLMEDLKSYYYT*NRKKDLPLLSQIVDVL*YTNDEGANTSITVTNNDLNFRL 434
           T+M+D+K +Y   +  +DL L ++   +  +T D G N+     N D +F L
Sbjct: 287 TMMKDVKKFYMPVDYSRDLYLYNEESKLSYFTEDLGWNSYWYYLNMDYSFFL 338


>AE014134-3568|AAN11144.1|  439|Drosophila melanogaster CG31703-PA,
           isoform A protein.
          Length = 439

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +2

Query: 47  GLISAKSKSNRYTAKNIKHSRLGLFHCETETRLHITPSQIFASI*VNITWDAAVR 211
           G +  ++++ + T K++   RL  F+ E +T   +   +IF ++  N  WD  ++
Sbjct: 384 GDVETETETEKGTEKDLHSQRLHTFNIELDTTGLVPFHEIFPNVKFNSPWDEIMK 438


>AE014134-1243|AAF52488.1|  402|Drosophila melanogaster CG13783-PA
           protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 206 VRFQSHRQQSLPTKDKDTFTPIFRNIDGRFKIIL 307
           +R Q H+++ L  ++K   TP+ RNI+    + L
Sbjct: 365 LRQQKHQKELLAMREKSRNTPLIRNIENEVSLAL 398


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,141,448
Number of Sequences: 53049
Number of extensions: 475224
Number of successful extensions: 907
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)