Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f12
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    27   1.5  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   2.6  

>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 195 ASNNLDNVKEQIDFDNVIPASPTSRTK-IKSVFKRCFESTFD 73
           A+N L  + E+  F+ ++P  P  R+K I+ + +   +STFD
Sbjct: 18  ATNTLKRLSEKYHFEFIVP-DPHDRSKTIEKIHEAASKSTFD 58


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -2

Query: 339 ERNKRKDTCNTQGSVKKKRHIDVEFSKCLEEDSHLFNFVDIPDDINLKASNNLDNVKEQI 160
           E N   DT  T G+  K+     E +K        F+F    +  N KAS + +  K Q+
Sbjct: 798 ENNIPNDTTKTNGNATKRTLEQTEDAK-----PFAFSFGSTTEQANKKASTSNETTKPQL 852

Query: 159 D 157
           D
Sbjct: 853 D 853


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,789
Number of Sequences: 5004
Number of extensions: 31153
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)